<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/beagle" style="color: #1068bf; text-decoration: none;">Debian Med / beagle</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/beagle/-/commit/80d9380a02e5854e0a3aa83516dec215f31ee9dd" style="color: #1068bf; text-decoration: none;">80d9380a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T11:51:59+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 220505</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/beagle/-/commit/25b1eafef8173c19538cb34a2e0c26f8e2e20a25" style="color: #1068bf; text-decoration: none;">25b1eafe</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T11:51:59+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/beagle/-/commit/bdfed554152fa217990cd3d77fad3ae561a6e4c4" style="color: #1068bf; text-decoration: none;">bdfed554</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T11:51:59+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/220505'
Update to upstream version '220505'
with Debian dir 5167362711a49e95565dc288380df298856a6a68</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/beagle/-/commit/cf0e3105ce0928de9a3f4f187974d1dc67bc84c0" style="color: #1068bf; text-decoration: none;">cf0e3105</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T11:52:00+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Standards-Version: 4.6.1
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/beagle/-/commit/38bf3dea61aa45e6d9d0689ddd8503cb053e85fa" style="color: #1068bf; text-decoration: none;">38bf3dea</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T11:53:26+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#82ed8855da81abac877dbd07e4faa17b2774a3fd" style="color: #1068bf; text-decoration: none;">
main/CompHapSegment.java
→
beagleutil/CompHapSegment.java
</a>
</li>
<li class="file-stats">
<a href="#85534c07448fab5d8653b5c56269bf9fe1c7283e" style="color: #1068bf; text-decoration: none;">
beagleutil/PbwtDivUpdater.java
</a>
</li>
<li class="file-stats">
<a href="#a4bc486b85abac7297ff55f6cdea725aa089711c" style="color: #1068bf; text-decoration: none;">
blbutil/BitList.java
→
blbutil/BitArray.java
</a>
</li>
<li class="file-stats">
<a href="#6079b16bd032367aafb4fb3b5a7ec3cc428ebc03" style="color: #1068bf; text-decoration: none;">
blbutil/FileUtil.java
</a>
</li>
<li class="file-stats">
<a href="#4e6ab3267343934e3de38299e6fdc4e3f2a300d2" style="color: #1068bf; text-decoration: none;">
blbutil/Filter.java
</a>
</li>
<li class="file-stats">
<a href="#1928aebe75a42243fe3f56cf57a32c12bb414d3e" style="color: #1068bf; text-decoration: none;">
blbutil/InputIt.java
</a>
</li>
<li class="file-stats">
<a href="#21e2e24eb0204d47dfc1265291352d4231fa819e" style="color: #1068bf; text-decoration: none;">
blbutil/MultiThreadUtils.java
</a>
</li>
<li class="file-stats">
<a href="#3e5b49c9c700b85f5ed3318cbab573548eb58f0a" style="color: #1068bf; text-decoration: none;">
<span class="deleted-file">
−
blbutil/Pair.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#569d1e1ae30f252e98526e6aa870ed406131b290" style="color: #1068bf; text-decoration: none;">
blbutil/Utilities.java
</a>
</li>
<li class="file-stats">
<a href="#660fa08874a280c3a191249af38136139fa806d3" style="color: #1068bf; text-decoration: none;">
blbutil/Validate.java
</a>
</li>
<li class="file-stats">
<a href="#b2ba9080612250531e5601745e2e52ed48f1770e" style="color: #1068bf; text-decoration: none;">
bref/AsIsBref3Writer.java
</a>
</li>
<li class="file-stats">
<a href="#88c53e80182ef20a8cdfed427d5e651d37907e75" style="color: #1068bf; text-decoration: none;">
bref/Bref3.java
</a>
</li>
<li class="file-stats">
<a href="#75b4875e136736cf8fa3756993e43d51ba5a980f" style="color: #1068bf; text-decoration: none;">
bref/Bref3It.java
</a>
</li>
<li class="file-stats">
<a href="#923ab2081306a60ce903c2304d7d5d6f3224175c" style="color: #1068bf; text-decoration: none;">
bref/Bref3Reader.java
</a>
</li>
<li class="file-stats">
<a href="#8858d04c3e071f8148d52b04a39944b5f4560a7a" style="color: #1068bf; text-decoration: none;">
bref/SeqCoder3.java
</a>
</li>
<li class="file-stats">
<a href="#dcb0e12a67291331c7d1fd8dd651714b291527c8" style="color: #1068bf; text-decoration: none;">
bref/UnBref3.java
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf; text-decoration: none;">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2" style="color: #1068bf; text-decoration: none;">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#d431de7a0c4ce83c756519ac2461da10c7d77d1d" style="color: #1068bf; text-decoration: none;">
imp/CodedSteps.java
</a>
</li>
<li class="file-stats">
<a href="#67a867e14e93b445b6c7f4b319e9a70c9961e9a7" style="color: #1068bf; text-decoration: none;">
imp/HaplotypeCoder.java
</a>
</li>
<li class="file-stats">
<a href="#923f1b8e82851d3ec572b6c0fe2053ba7176c20c" style="color: #1068bf; text-decoration: none;">
imp/ImpData.java
</a>
</li>
<li class="file-stats">
<a href="#315086b42467cd64d67b45236c874d197c068244" style="color: #1068bf; text-decoration: none;">
imp/ImpStates.java
</a>
</li>
<li class="file-stats">
<a href="#b1ebb9cb15ced82454b7dc59d3b156655307927b" style="color: #1068bf; text-decoration: none;">
ints/IndexArray.java
</a>
</li>
<li class="file-stats">
<a href="#f476aeb05c4d494ef711eb392393ad6a239dfba0" style="color: #1068bf; text-decoration: none;">
ints/IntArray.java
</a>
</li>
<li class="file-stats">
<a href="#875541d21afabe96c6223e33df45b58881eef4c6" style="color: #1068bf; text-decoration: none;">
ints/IntIntMap.java
</a>
</li>
<li class="file-stats">
<a href="#2ad0efaccf66628e1858a4c133e8914e33eb2221" style="color: #1068bf; text-decoration: none;">
main/Main.java
</a>
</li>
<li class="file-stats">
<a href="#eb9d1a1acbc4ec0ffa4eeee52a6d83ce5c15c2e1" style="color: #1068bf; text-decoration: none;">
main/Par.java
</a>
</li>
<li class="file-stats">
<a href="#611062e8e142f9ef1d5f5200bb13b0a16611898e" style="color: #1068bf; text-decoration: none;">
main/RunStats.java
</a>
</li>
<li class="file-stats">
<a href="#5cd7995a7684c4895d668ddb8873a9fba68706d1" style="color: #1068bf; text-decoration: none;">
main/WindowWriter.java
</a>
</li>
<li class="file-stats">
<a href="#b1d7cb2db18d084fa285491c1742e35ce2f12f43" style="color: #1068bf; text-decoration: none;">
phase/BasicPhaseStates.java
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/beagle/-/compare/a8e5fbe0c92e879bb47772d921f94a1072423b5c...38bf3dea61aa45e6d9d0689ddd8503cb053e85fa" style="color: #1068bf; text-decoration: none;">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>