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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/nanopolish" style="color: #1068bf; text-decoration: none;">Debian Med / nanopolish</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/c9c51e43898ed93ff1d189fbfb90f27a83e0753e" style="color: #1068bf; text-decoration: none;">c9c51e43</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-06-29T17:50:34+02:00</i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 0.14.0</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
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<a href="#86d2ca310d9edfd28b2ff37089f244cab7193ffc" style="color: #1068bf; text-decoration: none;">
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.github/workflows/nanopolish.yaml
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<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44" style="color: #1068bf; text-decoration: none;">
.gitmodules
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<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c" style="color: #1068bf; text-decoration: none;">
Makefile
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d" style="color: #1068bf; text-decoration: none;">
README.md
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<a href="#cfaaf015b890082873482ee5d8a3acf5d93ee4f3" style="color: #1068bf; text-decoration: none;">
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etc/htslib_config.h
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<a href="#2b49f14432c31c58ffd8288c837d0774e4b096eb" style="color: #1068bf; text-decoration: none;">
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src/basemods/nanopolish_basemods.cpp
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<a href="#8e8eb434be532f08fed915a64027f0cc6b720f7c" style="color: #1068bf; text-decoration: none;">
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src/basemods/nanopolish_basemods.h
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<li class="file-stats">
<a href="#2c2d378f3c858273fcc789072d022d51957e8a98" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_alphabet.h
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<a href="#f8c90a47caede8a711c7db96f3d9177546e1d70a" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_bam_processor.cpp
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<li class="file-stats">
<a href="#45a2bcc01fb813f9245bb785a5bc3742f5eb9728" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_bam_processor.h
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<li class="file-stats">
<a href="#9102a0c62af6ff12a6d54fae93a06ce123bf52aa" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_common.cpp
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<a href="#58a43c64ead5187f569b28ec5ca98b313c48d7c7" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_common.h
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<a href="#149ac5b0310ff017664f0645808befe6bda2ed83" style="color: #1068bf; text-decoration: none;">
src/common/nanopolish_variant.cpp
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<a href="#dd987838388d2c42ef5e4897eaef047ea34a4426" style="color: #1068bf; text-decoration: none;">
src/io/nanopolish_fast5_loader.cpp
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<li class="file-stats">
<a href="#0cd6b73075b58ed0f1d99c985fdbc72126ff992f" style="color: #1068bf; text-decoration: none;">
src/io/nanopolish_fast5_loader.h
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<li class="file-stats">
<a href="#f493b0116deac6a76c35face87eef44c7c5a7f40" style="color: #1068bf; text-decoration: none;">
src/main/nanopolish.cpp
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<li class="file-stats">
<a href="#125985123a25635dc9e1a81a7b2849a0f12aa286" style="color: #1068bf; text-decoration: none;">
src/nanopolish_call_methylation.cpp
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<a href="#4216867892fe9b4184cfa96aeaa7c842975dad1f" style="color: #1068bf; text-decoration: none;">
src/nanopolish_detect_polyi.cpp
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<a href="#9378b91401e605484fa59f6a27ced91781e32684" style="color: #1068bf; text-decoration: none;">
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src/nanopolish_extract.cpp
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<a href="#9eb41cef9ff73dd9dff95cb2e32a89657a80db1c" style="color: #1068bf; text-decoration: none;">
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src/nanopolish_extract.h
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<a href="#c56320ad8d1dd26df770bc8d4edd15a6f32bc7b6" style="color: #1068bf; text-decoration: none;">
src/nanopolish_fast5_check.cpp
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<a href="#564d4c31004e8a389ae718d65222f39bdc529066" style="color: #1068bf; text-decoration: none;">
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src/nanopolish_getmodel.cpp
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<a href="#f8f0551a16c78222a0f3dcfac4f337e2fa2e6d96" style="color: #1068bf; text-decoration: none;">
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src/nanopolish_getmodel.h
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<a href="#2d62e059707d17d6d88d86a4af4fce9c4c482e3d" style="color: #1068bf; text-decoration: none;">
src/nanopolish_index.cpp
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<a href="#ecc53e18e8deb4dabc0e2ec2afe10d1d4c114f91" style="color: #1068bf; text-decoration: none;">
src/nanopolish_phase_reads.cpp
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<a href="#3e7589d9f810f7643a9b0d6c2e885784173011a1" style="color: #1068bf; text-decoration: none;">
src/nanopolish_polya_estimator.cpp
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<a href="#7c87ffe15195ab460f3be130ef4d8324408853f0" style="color: #1068bf; text-decoration: none;">
src/nanopolish_read_db.cpp
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<a href="#56330d5566ccd748f6bc882374c02aa256d67d8a" style="color: #1068bf; text-decoration: none;">
src/nanopolish_read_db.h
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<a href="#244f2077b9e28a5e6394deda0b7574b0f80f501c" style="color: #1068bf; text-decoration: none;">
src/nanopolish_squiggle_read.cpp
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<a href="#0cd5a7898ca2515cf6be03b2013fef5dda71d2cd" style="color: #1068bf; text-decoration: none;">
src/nanopolish_squiggle_read.h
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>
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—
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