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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/hyphy" style="color: #1068bf; text-decoration: none;">Debian Med / hyphy</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/hyphy/-/commit/baa2765edf42b9dec634b57bd008b7407827d213" style="color: #1068bf; text-decoration: none;">baa2765e</a></strong>
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<span>by Étienne Mollier</span>
<i>at 2022-07-15T09:59:56+02:00</i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 2.5.40+dfsg</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae" style="color: #1068bf; text-decoration: none;">
CMakeLists.txt
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<a href="#595b42362bc80e51259da598ac8ff2dd32cd7358" style="color: #1068bf; text-decoration: none;">
res/TemplateBatchFiles/GARD.bf
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<a href="#1fdf1a1dd435e31170c3db4d153f0c2f92c88581" style="color: #1068bf; text-decoration: none;">
res/TemplateBatchFiles/MSS-selector-2.bf
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<a href="#0471440a9c90a004e27c37511b1f80d0cba41012" style="color: #1068bf; text-decoration: none;">
res/TemplateBatchFiles/MSS-selector.bf
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res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
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<a href="#bc98d7300147ce39ef8ee0f9b35f3252bebd01d2" style="color: #1068bf; text-decoration: none;">
res/TemplateBatchFiles/SelectionAnalyses/MEME.bf
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<a href="#80cb7c212661a2afbd05c16dce9f84f45709578e" style="color: #1068bf; text-decoration: none;">
res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
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<a href="#cf5243a3058ebeab74574f8cd2c771cd63a43208" style="color: #1068bf; text-decoration: none;">
res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
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<a href="#c079be28c5231888d711d5c41d1be180223dfce6" style="color: #1068bf; text-decoration: none;">
res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
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<a href="#e8578acaed39aa42e302cfc6b43e09678d292e72" style="color: #1068bf; text-decoration: none;">
res/TemplateBatchFiles/libv3/models/codon/MSS.bf
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<a href="#0ad5f4d1790906a0091532d9ca355a6162bf3c31" style="color: #1068bf; text-decoration: none;">
res/TemplateBatchFiles/libv3/models/model_functions.bf
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<a href="#c7933e171033f4eac9d83419583cca5474f9266c" style="color: #1068bf; text-decoration: none;">
res/TemplateBatchFiles/libv3/tasks/estimators.bf
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<a href="#02cbcb76e8ce1aa3e72d55e6696cda20813d57b6" style="color: #1068bf; text-decoration: none;">
src/core/batchlan.cpp
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<a href="#cbedcf5fec686e5f563504b995c5d7d07fd8c6b2" style="color: #1068bf; text-decoration: none;">
src/core/batchlanruntime.cpp
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<a href="#510613b42c8a7654f32b2e5cf38d6a8a88fad772" style="color: #1068bf; text-decoration: none;">
src/core/calcnode.cpp
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<a href="#d09b45303442d6299978fa8d0c8f3338d6a17886" style="color: #1068bf; text-decoration: none;">
src/core/formula.cpp
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<a href="#07aceb8d215a75908cea626d9c80bc2a7c06639c" style="color: #1068bf; text-decoration: none;">
src/core/global_things.cpp
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<a href="#2c4d8813435a13d8730c1c223855c5b040c81a84" style="color: #1068bf; text-decoration: none;">
src/core/hbl_env.cpp
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<a href="#40fc4f1e42852e6f2302e213cd9b3646abe98291" style="color: #1068bf; text-decoration: none;">
src/core/include/formula.h
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<a href="#962c6920ad69ee3e3b68356427f396e1e2654829" style="color: #1068bf; text-decoration: none;">
src/core/include/hbl_env.h
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<a href="#0aac57334e127d66d9818be138193215c7262bbe" style="color: #1068bf; text-decoration: none;">
src/core/include/matrix.h
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<a href="#0752e7dcfe8278adce93e1644d6c5720f738fb4e" style="color: #1068bf; text-decoration: none;">
src/core/include/operation.h
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<a href="#2a8dd324ded753b0b3c559ac3950a2881ccd7a93" style="color: #1068bf; text-decoration: none;">
src/core/likefunc.cpp
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<a href="#81843dd3cf849d08e0f197d837dd373534c7c756" style="color: #1068bf; text-decoration: none;">
src/core/matrix.cpp
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<a href="#795bd9642f0c76f4bba4eaba7f491566cf16e788" style="color: #1068bf; text-decoration: none;">
src/core/operation.cpp
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<a href="#da5a89d08e8ba5fdabf6bc90c935e625a50f5007" style="color: #1068bf; text-decoration: none;">
src/core/tree.cpp
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<a href="#64ecf51ff02144471840e8841603616fd0ceb146" style="color: #1068bf; text-decoration: none;">
src/core/variablecontainer.cpp
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tests/data/Bacterial_PTS_trehalose_transporter_suIII.nex
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tests/data/COXI.nex
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tests/data/COXI.mtnex
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tests/data/HIVvif.masked_nex
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>
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