<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/bedops" style="color: #1068bf; text-decoration: none;">Debian Med / bedops</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bedops/-/commit/3888d415ba430b67f86c7f356d38195ee53e6456" style="color: #1068bf; text-decoration: none;">3888d415</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2022-07-18T10:00:42+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 2.4.41+dfsg</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0" style="color: #1068bf; text-decoration: none;">
.github/workflows/main.yml
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7" style="color: #1068bf; text-decoration: none;">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#2f473ef69010f24d2546e13263bcc2c49befd2f3" style="color: #1068bf; text-decoration: none;">
CITATION.cff
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c" style="color: #1068bf; text-decoration: none;">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d" style="color: #1068bf; text-decoration: none;">
README.md
</a>
</li>
<li class="file-stats">
<a href="#21dcfe5fbfb2757e0fe4546b2f1f79ea5051688d" style="color: #1068bf; text-decoration: none;">
applications/bed/bedextract/src/ExtractRows.cpp
</a>
</li>
<li class="file-stats">
<a href="#685dac4f0812655b4a58bc53675590ff26f6b59e" style="color: #1068bf; text-decoration: none;">
applications/bed/bedmap/src/Bedmap.cpp
</a>
</li>
<li class="file-stats">
<a href="#a87d43a21ace249125fb90791f55ca5758ebdbd9" style="color: #1068bf; text-decoration: none;">
applications/bed/bedmap/src/Input.hpp
</a>
</li>
<li class="file-stats">
<a href="#b2cf88308691089e335f662e36d6987787300f9d" style="color: #1068bf; text-decoration: none;">
applications/bed/bedmap/src/TDefs.hpp
</a>
</li>
<li class="file-stats">
<a href="#bf943230aa6af8d1aaa22de8521b6e97beda8cce" style="color: #1068bf; text-decoration: none;">
applications/bed/bedops/src/BedPadReader.hpp
</a>
</li>
<li class="file-stats">
<a href="#551cab7384734ed68d58d0a000f9f38c7cc82388" style="color: #1068bf; text-decoration: none;">
applications/bed/bedops/src/Bedops.cpp
</a>
</li>
<li class="file-stats">
<a href="#405b477b374cd27614766cf5f744ae20f33bbfea" style="color: #1068bf; text-decoration: none;">
applications/bed/bedops/src/Input.hpp
</a>
</li>
<li class="file-stats">
<a href="#b2d40283bdc5b5267749f433671139a075686aae" style="color: #1068bf; text-decoration: none;">
applications/bed/bedops/test/TestPlan.xml
</a>
</li>
<li class="file-stats">
<a href="#c7e2ec9cc3edd9711fc0192045a4301a345b1fa4" style="color: #1068bf; text-decoration: none;">
applications/bed/closestfeats/src/BedReader.hpp
</a>
</li>
<li class="file-stats">
<a href="#7018858d65515eee6d6383012ce71a74096e8e09" style="color: #1068bf; text-decoration: none;">
applications/bed/closestfeats/src/ClosestFeature.cpp
</a>
</li>
<li class="file-stats">
<a href="#60073875f4307b95786e4751a9e37edc954e781b" style="color: #1068bf; text-decoration: none;">
applications/bed/closestfeats/src/Input.hpp
</a>
</li>
<li class="file-stats">
<a href="#f2237f720685494b8cc982369c9eed1c42e73c61" style="color: #1068bf; text-decoration: none;">
applications/bed/closestfeats/src/Printers.hpp
</a>
</li>
<li class="file-stats">
<a href="#c846a0073de7cc8dcdbac602fdc31b436e1d4975" style="color: #1068bf; text-decoration: none;">
applications/bed/conversion/src/convert2bed.c
</a>
</li>
<li class="file-stats">
<a href="#5658a671102c149d8496742e98033b881b013a05" style="color: #1068bf; text-decoration: none;">
applications/bed/conversion/src/convert2bed.h
</a>
</li>
<li class="file-stats">
<a href="#a47d22f05476dec05b6e46fb795fb881a60efd7d" style="color: #1068bf; text-decoration: none;">
applications/bed/conversion/src/wrappers/gtf2bed
</a>
</li>
<li class="file-stats">
<a href="#f8a59458a50dc0872e550df88fd36678d97d684b" style="color: #1068bf; text-decoration: none;">
applications/bed/conversion/src/wrappers/gtf2starch
</a>
</li>
<li class="file-stats">
<a href="#7ec18d6618b41e523f41958a339ef78103c6e349" style="color: #1068bf; text-decoration: none;">
applications/bed/sort-bed/src/CheckSort.cpp
</a>
</li>
<li class="file-stats">
<a href="#4039c0239288850a150f82e3a23df8f16a9c8631" style="color: #1068bf; text-decoration: none;">
applications/bed/sort-bed/src/Sort.cpp
</a>
</li>
<li class="file-stats">
<a href="#e8642eb192a0c5b1f60c69f3c6be28fb776d8c3c" style="color: #1068bf; text-decoration: none;">
applications/bed/sort-bed/src/SortDetails.cpp
</a>
</li>
<li class="file-stats">
<a href="#6b0cad9e7fc80f34c53fac130a88828417fafc65" style="color: #1068bf; text-decoration: none;">
applications/bed/sort-bed/src/Structures.hpp
</a>
</li>
<li class="file-stats">
<a href="#5d557c3ca00521c284241a5b0e91b1dee543cbd2" style="color: #1068bf; text-decoration: none;">
applications/bed/sort-bed/src/update-sort-bed-migrate-candidates.py
</a>
</li>
<li class="file-stats">
<a href="#6c66ab1117013b75fde5380ff2b49c332d392191" style="color: #1068bf; text-decoration: none;">
applications/bed/sort-bed/src/update-sort-bed-slurm.py
</a>
</li>
<li class="file-stats">
<a href="#3293b9e029cf4f59cb465113e840043efbb15077" style="color: #1068bf; text-decoration: none;">
applications/bed/sort-bed/src/update-sort-bed-starch-slurm.py
</a>
</li>
<li class="file-stats">
<a href="#efbe0b03c92965877c6b1c90abc3141f01555972" style="color: #1068bf; text-decoration: none;">
applications/bed/starch/src/Makefile.darwin
</a>
</li>
<li class="file-stats">
<a href="#2a7928495f486ce3bac5296c79c914865d08da35" style="color: #1068bf; text-decoration: none;">
applications/bed/starch/src/starch-diff.py
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/bedops/-/commit/3888d415ba430b67f86c7f356d38195ee53e6456" style="color: #1068bf; text-decoration: none;">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/bedops/-/commit/3888d415ba430b67f86c7f356d38195ee53e6456"}}</script>
</p>
</div>
</body>
</html>