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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/busco" style="color: #1068bf; text-decoration: none;">Debian Med / busco</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/busco/-/commit/9ffe6868e0867402c2aa4584a2d48690c02496aa" style="color: #1068bf; text-decoration: none;">9ffe6868</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-07-29T18:27:30+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 5.4.2</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/busco/-/commit/cad68471f970ce6453b350c68fe4e821e89e58f4" style="color: #1068bf; text-decoration: none;">cad68471</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-07-29T18:52:41+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Refresh, re-diff patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/busco/-/commit/880e9452ff047c537502ae82f83c2741ea3da3e8" style="color: #1068bf; text-decoration: none;">880e9452</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-07-29T18:52:52+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Upload to unstable
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/busco/-/commit/eeb5456dbfbbe904e5f02ea318ce818f190cbcd6" style="color: #1068bf; text-decoration: none;">eeb5456d</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-07-29T20:06:26+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Fix bbmap instead of bbtools
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/busco/-/commit/b3fb079899f95ce0839e58f296ab189d6a651cb5" style="color: #1068bf; text-decoration: none;">b3fb0798</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-07-29T20:06:26+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Add depend on bbmap
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/busco/-/commit/e8362d44720c854a83d5c1a8c92122886fc3a41b" style="color: #1068bf; text-decoration: none;">e8362d44</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2022-07-29T20:06:26+05:30</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a" style="color: #1068bf; text-decoration: none;">
CHANGELOG
</a>
</li>
<li class="file-stats">
<a href="#80680bd277bcadaacce5cbc6697d87d491a734b6" style="color: #1068bf; text-decoration: none;">
config/config.ini
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf; text-decoration: none;">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2" style="color: #1068bf; text-decoration: none;">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#73aa59059f008b58205605988a73a8de18391092" style="color: #1068bf; text-decoration: none;">
<span class="new-file">
+
debian/patches/find-bbmap-instead-of-bbtools.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#e8c92be72798d359b194a6dae2d7a90f61fe681a" style="color: #1068bf; text-decoration: none;">
debian/patches/fix-and-disable-tests.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96" style="color: #1068bf; text-decoration: none;">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#2ada855635f5c6d16c195f4d86d45f3b73878c0f" style="color: #1068bf; text-decoration: none;">
src/busco/Actions.py
</a>
</li>
<li class="file-stats">
<a href="#de7754708bf8aa012a49a842a0d52b6628af3d59" style="color: #1068bf; text-decoration: none;">
src/busco/AutoLineage.py
</a>
</li>
<li class="file-stats">
<a href="#e497bbf996017c0692c161d2cfed28374276cc73" style="color: #1068bf; text-decoration: none;">
src/busco/BuscoConfig.py
</a>
</li>
<li class="file-stats">
<a href="#187e8b3b00a66c92055c44aac0cd5c916c6c913e" style="color: #1068bf; text-decoration: none;">
src/busco/BuscoDownloadManager.py
</a>
</li>
<li class="file-stats">
<a href="#ea2771659c3ac27a7eedddf367d04f0deb13246b" style="color: #1068bf; text-decoration: none;">
src/busco/BuscoLogger.py
</a>
</li>
<li class="file-stats">
<a href="#414e3994e90f7a52298faa998003b76c548435da" style="color: #1068bf; text-decoration: none;">
src/busco/BuscoPlacer.py
</a>
</li>
<li class="file-stats">
<a href="#a8fd6f8fc327bd92758f2c1e85bd45f1bad18df0" style="color: #1068bf; text-decoration: none;">
src/busco/BuscoRunner.py
</a>
</li>
<li class="file-stats">
<a href="#8a51b069da821add214ff0450e58d058e866eb0c" style="color: #1068bf; text-decoration: none;">
src/busco/ConfigManager.py
</a>
</li>
<li class="file-stats">
<a href="#ba1a56246dbcc4652eb6c8edd5d818e5b5c81d88" style="color: #1068bf; text-decoration: none;">
src/busco/_version.py
</a>
</li>
<li class="file-stats">
<a href="#327451a27744b5461b22fe5b3c3f230fdae35ad7" style="color: #1068bf; text-decoration: none;">
src/busco/analysis/Analysis.py
</a>
</li>
<li class="file-stats">
<a href="#cf0fa70998d90d794d0bbb251526f730829daf8b" style="color: #1068bf; text-decoration: none;">
src/busco/analysis/BuscoAnalysis.py
</a>
</li>
<li class="file-stats">
<a href="#38e7c7424f4128a85c46ceb416b47ef2236e42b9" style="color: #1068bf; text-decoration: none;">
src/busco/analysis/GeneSetAnalysis.py
</a>
</li>
<li class="file-stats">
<a href="#0750dd8caad8daa319bd078a0d80872708eb7fa7" style="color: #1068bf; text-decoration: none;">
src/busco/analysis/GenomeAnalysis.py
</a>
</li>
<li class="file-stats">
<a href="#ebcdfbf3c61b5f1c742810606673eae398f762bc" style="color: #1068bf; text-decoration: none;">
src/busco/analysis/TranscriptomeAnalysis.py
</a>
</li>
<li class="file-stats">
<a href="#9d54a8efc4f30849596104b53c7b5221e320b1c7" style="color: #1068bf; text-decoration: none;">
src/busco/busco_tools/Toolset.py
</a>
</li>
<li class="file-stats">
<a href="#df66f82199021e386615cdfb8a774a29ed2f241b" style="color: #1068bf; text-decoration: none;">
src/busco/busco_tools/augustus.py
</a>
</li>
<li class="file-stats">
<a href="#44a7a9c3d5eacdcf67af9565b069a28d0ef5092d" style="color: #1068bf; text-decoration: none;">
src/busco/busco_tools/base.py
</a>
</li>
<li class="file-stats">
<a href="#61301d7e3fa29db93f2995bd68925a68fb7b173d" style="color: #1068bf; text-decoration: none;">
<span class="new-file">
+
src/busco/busco_tools/bbtools.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#ceda4baf9d2597a6f78ef5b8def54e0d9bcab618" style="color: #1068bf; text-decoration: none;">
src/busco/busco_tools/blast.py
</a>
</li>
<li class="file-stats">
<a href="#a5f82d71f925534007d3cb3b900ad8be00859451" style="color: #1068bf; text-decoration: none;">
src/busco/busco_tools/hmmer.py
</a>
</li>
<li class="file-stats">
<a href="#53f20ac1df6a610b6a21de977367ddb3704f3394" style="color: #1068bf; text-decoration: none;">
src/busco/busco_tools/metaeuk.py
</a>
</li>
<li class="file-stats">
<a href="#a8bb1ce5dbb762d6d747877e3cd1a112432603a4" style="color: #1068bf; text-decoration: none;">
src/busco/busco_tools/prodigal.py
</a>
</li>
<li class="file-stats">
<a href="#7e3d64a99911d797831b8bd445522c48f255b57d" style="color: #1068bf; text-decoration: none;">
src/busco/busco_tools/sepp.py
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #666;">
—
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