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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/bbmap" style="color: #1068bf; text-decoration: none;">Debian Med / bbmap</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/21b5a9575404d9e99217115c448f7b50b8999ade" style="color: #1068bf; text-decoration: none;">21b5a957</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-08-03T13:38:43+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/1c662261847da712e5b04b94277f8aa712c37619" style="color: #1068bf; text-decoration: none;">1c662261</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-08-03T13:38:44+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 38.97+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/c1cecd8b6c160160f5aeb2e3423a4c4d62501afd" style="color: #1068bf; text-decoration: none;">c1cecd8b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-08-03T13:38:52+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/38.97+dfsg'
Update to upstream version '38.97+dfsg'
with Debian dir e200566c98c7c77ad78befbbbf969c53d3970503</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/51186649135b733ce7f2e04014d92bb8ed47d82a" style="color: #1068bf; text-decoration: none;">51186649</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-08-03T13:38:52+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Standards-Version: 4.6.1
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/2d6656bc19740b9cc262cd13bfd522a5d50c1669" style="color: #1068bf; text-decoration: none;">2d6656bc</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-08-03T13:51:42+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>d/rules: enable hardening.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/d95e7fb5b260358a2fae04f475d75b1eed9f4605" style="color: #1068bf; text-decoration: none;">d95e7fb5</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2022-08-03T13:53:12+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>ready to upload to unstable.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d" style="color: #1068bf; text-decoration: none;">
README.md
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<a href="#35eed5db6f93b378bad3ac23d1eb656c1424333a" style="color: #1068bf; text-decoration: none;">
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Xcalcmem.sh
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<li class="file-stats">
<a href="#67d907d61087ac2bc1410f5791ecd5d94426cc74" style="color: #1068bf; text-decoration: none;">
bbduk.sh
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<li class="file-stats">
<a href="#4a18c3c5eec989524e435c6521f755ab31034d3a" style="color: #1068bf; text-decoration: none;">
clumpify.sh
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<a href="#49d09016d8268b25585bb4814ca03a279573d937" style="color: #1068bf; text-decoration: none;">
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current/clump/Hasher.java
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<a href="#5679e4c772d1c2b111dbcd93c6cd1d5a7c0f50e3" style="color: #1068bf; text-decoration: none;">
current/clump/KmerSort.java
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<li class="file-stats">
<a href="#090a5d3d3431125b6dff5f89cd4cc81c50dd2910" style="color: #1068bf; text-decoration: none;">
current/clump/KmerSort1.java
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<a href="#8abfd720134cdc771f6feb3c373cc6abe51c0f3d" style="color: #1068bf; text-decoration: none;">
current/clump/KmerSort2.java
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</li>
<li class="file-stats">
<a href="#c1f88416f8a24c20df9aefa087b5736241e082fa" style="color: #1068bf; text-decoration: none;">
current/clump/KmerSort3.java
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<li class="file-stats">
<a href="#8b67bed9478adfa01af5effee08f3ea398d80963" style="color: #1068bf; text-decoration: none;">
current/clump/KmerSplit.java
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<a href="#87e09ce245832e04b8a3d06edd667cfac9295e33" style="color: #1068bf; text-decoration: none;">
current/icecream/IceCreamFinder.java
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</li>
<li class="file-stats">
<a href="#06a7eaaf098b8d2e7c18a48b5d98671b027f6af9" style="color: #1068bf; text-decoration: none;">
current/jgi/BBDuk.java
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<a href="#635fa9bb7034f5bd7a766f17d0d6cc9b0800f06f" style="color: #1068bf; text-decoration: none;">
current/jgi/RQCFilter2.java
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<li class="file-stats">
<a href="#c1eb3ba3e50eb26c73088b4da40ccd2361d064a3" style="color: #1068bf; text-decoration: none;">
current/jgi/RQCFilterStats.java
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<li class="file-stats">
<a href="#187cd9d49b7c25c10731650b44504aafb9eb2fa1" style="color: #1068bf; text-decoration: none;">
current/shared/Parser.java
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<a href="#ef3b3e694c0bbaa70bf4c35a23c328ce44020fb6" style="color: #1068bf; text-decoration: none;">
current/shared/Shared.java
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<a href="#14fe639b07fd847461a2af0e6f8941d849848429" style="color: #1068bf; text-decoration: none;">
current/stream/FASTQ.java
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<a href="#a7cccac0c9e3ce8fcea270125d8329c409c781d1" style="color: #1068bf; text-decoration: none;">
current/tax/GiToTaxid.java
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<a href="#901bdbfa60205c675be60d3fa183dbbff4f5658b" style="color: #1068bf; text-decoration: none;">
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current/tax/GiToTaxidInt.java
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<a href="#ef479b2702704ccabfeb99dfbba06448b794752b" style="color: #1068bf; text-decoration: none;">
current/tax/TaxServer.java
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<a href="#f983ca3b863aeefdc8a5af4feffca4582a7fa91d" style="color: #1068bf; text-decoration: none;">
current/tax/TaxTree.java
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf; text-decoration: none;">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2" style="color: #1068bf; text-decoration: none;">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67" style="color: #1068bf; text-decoration: none;">
debian/rules
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<a href="#2f1f31317e182ac33d5588ced7cd3e1807d82495" style="color: #1068bf; text-decoration: none;">
docs/changelog.txt
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<li class="file-stats">
<a href="#9987ab0d56f16295f54349f6c81020fd130981e3" style="color: #1068bf; text-decoration: none;">
removecatdogmousehuman.sh
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<li class="file-stats">
<a href="#20e87219ac67aaa797f562324d1b104fc07b648f" style="color: #1068bf; text-decoration: none;">
removehuman.sh
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<a href="#e3098a112479d051ffa11669086944ad085232cc" style="color: #1068bf; text-decoration: none;">
removehuman2.sh
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<a href="#098de73a43baa620dfd2d5bb4286132e821889eb" style="color: #1068bf; text-decoration: none;">
removemicrobes.sh
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<a href="#9f02f5242e6cef7d067a60833b9dcfe6d3692130" style="color: #1068bf; text-decoration: none;">
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resources/PacBioAdapter.fa
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>
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