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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Mohd Bilal pushed to branch master
at <a href="https://salsa.debian.org/med-team/delly" style="color: #1068bf;">Debian Med / delly</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/96d90ccfe5a9b39d6b4a0b0687175d9e28652a8a" style="color: #1068bf;">96d90ccf</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T13:18:27+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/7b060ce951c6c78009118b32fb03ad695089f9c2" style="color: #1068bf;">7b060ce9</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T13:18:33+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 1.1.3</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/00b5d4f8d2d75a8a2f7336fdb6cf909e01f26b47" style="color: #1068bf;">00b5d4f8</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T13:18:34+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/1.1.3'
Update to upstream version '1.1.3'
with Debian dir 9e6f75396c2119944f3383a0c827e450ce6c5e90</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/f406333fe32b5f7209e474c755987ff7877cff43" style="color: #1068bf;">f406333f</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T13:18:34+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Standards-Version: 4.6.1
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/57cca538773565e4088cb85144025d52b403c23b" style="color: #1068bf;">57cca538</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T13:26:46+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Add autopkgtests
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/23aecf8843c6d486db2e628754bb3d29ab1f0a1d" style="color: #1068bf;">23aecf88</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T13:48:47+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>d/rules : remove src/dpe from build target
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/7f0b1d64322b09066560b9ae8112b6ec8932d5b5" style="color: #1068bf;">7f0b1d64</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T13:50:54+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>d/rules: add missing CPPFLAG for fixing blhc
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/1472f70516bcd2e91db03e70d6bc29fa1b3d7517" style="color: #1068bf;">1472f705</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T14:04:31+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>do not install dpe binary
dpe binary is now integrated into delly
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/ab08ea3966cbc3eb0dba353980e43aba63cb46f4" style="color: #1068bf;">ab08ea39</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T14:59:13+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>update tests
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/0b806ccf7e3e7b2c61c56d4c05cc3954d4ddc0e3" style="color: #1068bf;">0b806ccf</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T15:00:47+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>use dpkg-buildflags for setting buildflags
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/delly/-/commit/bdd387c08ab0ee91dca5c3982e6b5a0ba87e63b3" style="color: #1068bf;">bdd387c0</a></strong>
<div>
<span>by Mohammed Bilal</span>
<i>at 2022-08-10T15:03:05+00:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update changelog
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dead31ae1c2c6a3e53caa1296ef7ef4d7ff00bae" style="color: #1068bf;">
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.github/workflows/compiler.yml
</span>
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<a href="#f98b0468fc3e9c023f483cbd548c3c82577ce1e2" style="color: #1068bf;">
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.github/workflows/docker-parallel.yml
</span>
</a>
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<li class="file-stats">
<a href="#8df509fd9017b26a5dea8c5c5f465ce36a30cfb1" style="color: #1068bf;">
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.github/workflows/macosx.yml
</span>
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</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c" style="color: #1068bf;">
Makefile
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d" style="color: #1068bf;">
README.md
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf;">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2" style="color: #1068bf;">
debian/control
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<a href="#3631335ffb557dce3f7c29f77f4ab73967d35b3d" style="color: #1068bf;">
debian/delly.install
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67" style="color: #1068bf;">
debian/rules
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<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0" style="color: #1068bf;">
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debian/tests/control
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<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f" style="color: #1068bf;">
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debian/tests/run-unit-test
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<a href="#6dc5636d753033d870847a5cc00737a93ef170a2" style="color: #1068bf;">
Dockerfile.parallel
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parallel/Dockerfile
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<a href="#44e2ce9634eb475699cabef7bdb1017aff3883df" style="color: #1068bf;">
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src/asmode.h
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src/assemble.h
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<a href="#09127824dfd1dcb511663f94ed3fb9ad5e9d7d5e" style="color: #1068bf;">
src/bed.h
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src/classify.h
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src/cnv.h
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src/coral.h
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src/coverage.h
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src/delly.cpp
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src/delly.h
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>
</div>
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