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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Aaron M. Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-vdb" style="color: #1068bf;">Debian Med / ncbi-vdb</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/e1be02db9e61c4edbe4507309dfbc113cdc8e354" style="color: #1068bf;">e1be02db</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-03-06T18:11:39-05:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 3.0.0+dfsg2</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/4f6b8baf860e7b552049d67179b0787b2bc86ff0" style="color: #1068bf;">4f6b8baf</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-07-29T12:28:47-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Formally start work on ncbi-vdb 3.0.0+dfsg-2 (to become +dfsg2-1).
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/65982f60d02e8582f46344a4363c16b095a56b33" style="color: #1068bf;">65982f60</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-07T16:02:37-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Formally start work on ncbi-vdb 2.11.2+dfsg-5.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/f31a9303c1512a3ab195c389b6c0363b17b6ed74" style="color: #1068bf;">f31a9303</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-24T15:03:53-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>debian/control: Clean up descriptions.
In particular, use a modern synopsis cribbed from vdb3/README.md as a
first paragraph across the board.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/14e065393200703e8cecf60e80e032d9d6a2697e" style="color: #1068bf;">14e06539</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-24T15:04:34-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Note that all packages already qualify as Multi-Arch: same.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/8d44ee5db40dd227c42851198b612eb8e2b11eda" style="color: #1068bf;">8d44ee5d</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-24T15:04:40-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>debian/copyright: Resync details with tarball contents.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/fea5dde5355e1ccfaf068633eb0bc19f12daf167" style="color: #1068bf;">fea5dde5</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-24T15:04:40-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>debian/copyright: Stop claiming Upstream-Name: ngs.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/2c03eee94e01c1495c52966f7d5dccaa249b2907" style="color: #1068bf;">2c03eee9</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-24T15:04:40-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Introduce ncbi-vdb-data for /usr/lib/ncbi-vdb.
These files are of interest to libncbi-wvdbN in addition to
libncbi-vdbN, and splitting them out also allows for a soft transition
to libncbi-vdb3, which would not otherwise permit coinstallation with
libncbi-vdb2.
* debian/control: Introduce ncbi-vdb-data (M-A: foreign) and have
libncbi-(w)vdb2 depend on it.
* debian/ncbi-vdb-data.install: Rename from libncbi-vdb2.install. (It
listed only default configuration files, with d-shlibs taking care
of the rest.)
* debian/rules: Move schemata to ncbi-vdb-data, not libncbi-vdb2.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/ee8c27b53cb5fe5f26a555113266649943d65874" style="color: #1068bf;">ee8c27b5</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-24T15:04:40-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>(debian/).gitignore: Ignore remaining generated files and subtrees.
* .gitignore: Also ignore libs/jni/jni(_md).h.
* debian/.gitignore (new): Ignore generated files and subtrees.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/4a056806c61af58872711cad1f5081a8d63a19df" style="color: #1068bf;">4a056806</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-24T15:04:40-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Standards-Version: 4.6.1
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/0d5665adfc71189c5d0f16543edf2d52c3d317e3" style="color: #1068bf;">0d5665ad</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-24T15:04:40-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Finalize ncbi-vdb 2.11.2+dfsg-5 for upload (to unstable).
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/4675344c920e0428da5da7e9085207e8bc19bbe2" style="color: #1068bf;">4675344c</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-25T00:52:12-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Merge (or port, as appropriate) changes from 2.11.2+dfsg-5.
* Account for changes to the binary package inventory.
* Account for layout changes.
* Extend upstream's copyright through 2022.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/130df4a62fdb048a97ad21687b5ba6e8b95a6a5b" style="color: #1068bf;">130df4a6</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-25T00:52:22-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>debian/copyright: Additionally exclude */vdb3/jwt-tool/googletest.
It came to my attention over formal line-ending mismatches relative to
the tarball (specifically in Visual Studio files).
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/449623f7939df8d559f57fe7ce386a9b17a673f5" style="color: #1068bf;">449623f7</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-25T00:52:22-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>debian/watch: Adjust dversionmangle to allow digits after +dfsg.
... per the (imminent) use of +dfsg2 for now.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/035f9e87043741d9e411b89feb757a3999073c90" style="color: #1068bf;">035f9e87</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-25T00:52:22-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Merge tag 'upstream/3.0.0+dfsg2'
Upstream version 3.0.0+dfsg2.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/7f5cb81d5669a66e226dd14988cd1a1e1378393b" style="color: #1068bf;">7f5cb81d</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-25T00:52:22-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>debian/rules: Clean up fully between builds.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/d5ed49701c2062375c24a88d1c7b32d4fa4578d3" style="color: #1068bf;">d5ed4970</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-25T00:52:22-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>d/control: Drop unneeded build deps: libngs-*, default-jdk-headless.
Keeping libngs-* would have resulted in a dependency cycle with sra-sdk
3.x (which incorporates ngs-sdk), and default-jdk-headless is heavy.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/44ea0d7c8a1fdcbd4db4c947ad9a62bbef345b67" style="color: #1068bf;">44ea0d7c</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-25T00:54:00-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>.gitignore: Also ignore obj-* and test/vdb/kfg/*/user-settings.mkfg.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/9ed1364d15a3ba469bd32e961d0d177395d1ab1e" style="color: #1068bf;">9ed1364d</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2022-08-25T00:55:47-04:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Finalize ncbi-vdb 3.0.0+dfsg2-1 for upload to experimental.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302" style="color: #1068bf;">
.gitignore
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<a href="#b92c9d7f6a1fe2f439cb4bef6011394658166981" style="color: #1068bf;">
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debian/.gitignore
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2" style="color: #1068bf;">
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debian/rules
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debian/watch
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