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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/igv" style="color: #1068bf;">Debian Med / igv</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/21c3ad2ef4177d0099582d832c9eaab464a71375" style="color: #1068bf;">21c3ad2e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T15:36:15+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 2.14.0+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/baf4c3559fc1a92c11688fa945d609b1f33c0585" style="color: #1068bf;">baf4c355</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T15:38:00+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/2.14.0+dfsg'
Update to upstream version '2.14.0+dfsg'
with Debian dir ad9e0359292db4c8fd144efb460f4d50c5f22dcc</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/f9402836e4ccef66a44c00176efdd38a57cf980f" style="color: #1068bf;">f9402836</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T15:44:56+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/b9b6ed5a47054e1212404f3477df8a9783d11ba8" style="color: #1068bf;">b9b6ed5a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T15:50:31+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Excluding more tests requiring the network
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/d05ae688b83e9b16e920a788c17f0b758fb7957e" style="color: #1068bf;">d05ae688</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T15:52:39+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/148397758aa40a88c6d28fe2f35c83e94c626054" style="color: #1068bf;">14839775</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T16:01:26+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Reworking build dependencies, honouring B-D-Indep
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/47432460dcd4e49ac12070917495f83df22eb675" style="color: #1068bf;">47432460</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T16:24:34+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Removing a wrong @Override annotation
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/bdd60b2b4e6ed7ec666c41bd9afb7263b6d855d3" style="color: #1068bf;">bdd60b2b</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T16:47:16+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Importing the forgotten @Ignore annotation
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/c1ad087e9ef6a0b9a5dc73b2ad67037a2deea9ed" style="color: #1068bf;">c1ad087e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T17:12:05+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Adding a Lintian override for very-long-lines in a file
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/eb4822fb2fc1efe2ec950e5c6b4047e435620d50" style="color: #1068bf;">eb4822fb</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T17:15:37+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#26faf2a07a9e1acfeeda717bc1a5b409d726f22e" style="color: #1068bf;">
<span class="deleted-file">
−
IGV.iml
</span>
</a>
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<a href="#f07866736216be0ee2aba49e392191aeae700a35" style="color: #1068bf;">
build.gradle
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf;">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2" style="color: #1068bf;">
debian/control
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<a href="#b82bade5f44ca5d801fc783f14913cbfc12ab0bf" style="color: #1068bf;">
debian/patches/jide_dependency.patch
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<a href="#00df9f45d147cfb56b81feb60acdb54b36692838" style="color: #1068bf;">
<span class="deleted-file">
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debian/patches/no_instantiation_of_URLDecoder.patch
</span>
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<li class="file-stats">
<a href="#c0caa7ba42838b53ff0918c9edff2ea0c0000b18" style="color: #1068bf;">
debian/patches/omit_aws_stuff.patch
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96" style="color: #1068bf;">
debian/patches/series
</a>
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<li class="file-stats">
<a href="#158c9a83bf6361eb3dab802707c2ce0bb9662494" style="color: #1068bf;">
debian/patches/skip_tests_network.patch
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<li class="file-stats">
<a href="#068f542232225a30f13ec9152cf9bd2be33101a7" style="color: #1068bf;">
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debian/patches/wrong_override.patch
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<li class="file-stats">
<a href="#85ccdeeb03055211183e48520592d9a93592b330" style="color: #1068bf;">
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debian/source/lintian-overrides
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<a href="#930ff9e732755d92ad4ffb21bc49b7e5e3e6ad46" style="color: #1068bf;">
license.txt
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<a href="#1fb8e2280c40ad3293a068ef80c5b248e732e942" style="color: #1068bf;">
scripts/nsis/license_win.txt
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scripts/test_suite.args
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<a href="#f10a22965c766b6225e4c1388dadfe3e1030fe39" style="color: #1068bf;">
src/main/java/org/broad/igv/Globals.java
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<a href="#f21a02492456af68e10747392c75b747fe8656ee" style="color: #1068bf;">
src/main/java/org/broad/igv/aws/S3LoadDialog.java
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<a href="#e444ebf686027724485bf3a775c6cf5007472045" style="color: #1068bf;">
src/main/java/org/broad/igv/batch/CommandExecutor.java
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<a href="#3a01485c702a4253b186c11a8e8432e6098f26d3" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/BBDataSource.java
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src/main/java/org/broad/igv/bbfile/BBFileReader.java
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src/main/java/org/broad/igv/bbfile/BedFeature.java
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src/main/java/org/broad/igv/bbfile/BedData.java
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<a href="#02d5042b2ec40c70700025ccd014c90e5f6f11f3" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/BigBedDataBlock.java
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src/main/java/org/broad/igv/bbfile/BigBedIterator.java
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<a href="#0ed22943a67385843d51c6b1804b7922c7a1396f" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/codecs/BBBedCodec.java
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<a href="#d9865d43e6b2498132950359687d020553e62c61" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/codecs/BBCodec.java
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<a href="#ecaa31983fc5b2f8462b17d2a247e83b0493c89a" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/codecs/BBCodecFactory.java
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src/main/java/org/broad/igv/bbfile/codecs/BBGenePredCodec.java
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src/main/java/org/broad/igv/bbfile/codecs/BBNarowPeakCodec.java
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src/main/java/org/broad/igv/bbfile/codecs/BBRmskCodec.java
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src/main/java/org/broad/igv/feature/AbstractFeature.java
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>
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