<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/igv" style="color: #1068bf;">Debian Med / igv</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/21c3ad2ef4177d0099582d832c9eaab464a71375" style="color: #1068bf;">21c3ad2e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T15:36:15+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 2.14.0+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/baf4c3559fc1a92c11688fa945d609b1f33c0585" style="color: #1068bf;">baf4c355</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T15:38:00+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/2.14.0+dfsg'

Update to upstream version '2.14.0+dfsg'
with Debian dir ad9e0359292db4c8fd144efb460f4d50c5f22dcc</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/f9402836e4ccef66a44c00176efdd38a57cf980f" style="color: #1068bf;">f9402836</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T15:44:56+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/b9b6ed5a47054e1212404f3477df8a9783d11ba8" style="color: #1068bf;">b9b6ed5a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T15:50:31+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Excluding more tests requiring the network
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/d05ae688b83e9b16e920a788c17f0b758fb7957e" style="color: #1068bf;">d05ae688</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T15:52:39+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/148397758aa40a88c6d28fe2f35c83e94c626054" style="color: #1068bf;">14839775</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T16:01:26+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Reworking build dependencies, honouring B-D-Indep
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/47432460dcd4e49ac12070917495f83df22eb675" style="color: #1068bf;">47432460</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T16:24:34+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Removing a wrong @Override annotation
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/bdd60b2b4e6ed7ec666c41bd9afb7263b6d855d3" style="color: #1068bf;">bdd60b2b</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T16:47:16+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Importing the forgotten @Ignore annotation
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/c1ad087e9ef6a0b9a5dc73b2ad67037a2deea9ed" style="color: #1068bf;">c1ad087e</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T17:12:05+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Adding a Lintian override for very-long-lines in a file
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/eb4822fb2fc1efe2ec950e5c6b4047e435620d50" style="color: #1068bf;">eb4822fb</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2022-08-29T17:15:37+02:00</i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#26faf2a07a9e1acfeeda717bc1a5b409d726f22e" style="color: #1068bf;">
<span class="deleted-file">

IGV.iml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35" style="color: #1068bf;">
build.gradle
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf;">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2" style="color: #1068bf;">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#b82bade5f44ca5d801fc783f14913cbfc12ab0bf" style="color: #1068bf;">
debian/patches/jide_dependency.patch
</a>
</li>
<li class="file-stats">
<a href="#00df9f45d147cfb56b81feb60acdb54b36692838" style="color: #1068bf;">
<span class="deleted-file">

debian/patches/no_instantiation_of_URLDecoder.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#c0caa7ba42838b53ff0918c9edff2ea0c0000b18" style="color: #1068bf;">
debian/patches/omit_aws_stuff.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96" style="color: #1068bf;">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#158c9a83bf6361eb3dab802707c2ce0bb9662494" style="color: #1068bf;">
debian/patches/skip_tests_network.patch
</a>
</li>
<li class="file-stats">
<a href="#068f542232225a30f13ec9152cf9bd2be33101a7" style="color: #1068bf;">
<span class="new-file">
+
debian/patches/wrong_override.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#85ccdeeb03055211183e48520592d9a93592b330" style="color: #1068bf;">
<span class="new-file">
+
debian/source/lintian-overrides
</span>
</a>
</li>
<li class="file-stats">
<a href="#930ff9e732755d92ad4ffb21bc49b7e5e3e6ad46" style="color: #1068bf;">
license.txt
</a>
</li>
<li class="file-stats">
<a href="#1fb8e2280c40ad3293a068ef80c5b248e732e942" style="color: #1068bf;">
scripts/nsis/license_win.txt
</a>
</li>
<li class="file-stats">
<a href="#8fe47b4cf0a54cb6fd9ebc52c72790fc2ef4c9d2" style="color: #1068bf;">
scripts/test_suite.args
</a>
</li>
<li class="file-stats">
<a href="#f10a22965c766b6225e4c1388dadfe3e1030fe39" style="color: #1068bf;">
src/main/java/org/broad/igv/Globals.java
</a>
</li>
<li class="file-stats">
<a href="#f21a02492456af68e10747392c75b747fe8656ee" style="color: #1068bf;">
src/main/java/org/broad/igv/aws/S3LoadDialog.java
</a>
</li>
<li class="file-stats">
<a href="#e444ebf686027724485bf3a775c6cf5007472045" style="color: #1068bf;">
src/main/java/org/broad/igv/batch/CommandExecutor.java
</a>
</li>
<li class="file-stats">
<a href="#3a01485c702a4253b186c11a8e8432e6098f26d3" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/BBDataSource.java
</a>
</li>
<li class="file-stats">
<a href="#491f2b343da6312262d4f50dd17ea49dd4bc051b" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/BBFileReader.java
</a>
</li>
<li class="file-stats">
<a href="#1e17c836701e8ba27f078249c2aed5ed7a7532bc" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/BedFeature.java

src/main/java/org/broad/igv/bbfile/BedData.java
</a>
</li>
<li class="file-stats">
<a href="#02d5042b2ec40c70700025ccd014c90e5f6f11f3" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/BigBedDataBlock.java
</a>
</li>
<li class="file-stats">
<a href="#daf6a1e8b6300ace5dab596c4245cf365c14c5af" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/BigBedIterator.java
</a>
</li>
<li class="file-stats">
<a href="#0ed22943a67385843d51c6b1804b7922c7a1396f" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/codecs/BBBedCodec.java
</a>
</li>
<li class="file-stats">
<a href="#d9865d43e6b2498132950359687d020553e62c61" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/codecs/BBCodec.java
</a>
</li>
<li class="file-stats">
<a href="#ecaa31983fc5b2f8462b17d2a247e83b0493c89a" style="color: #1068bf;">
src/main/java/org/broad/igv/bbfile/codecs/BBCodecFactory.java
</a>
</li>
<li class="file-stats">
<a href="#c7422da2673d5eb8f757380e3ab97647e7af6ef1" style="color: #1068bf;">
<span class="deleted-file">

src/main/java/org/broad/igv/bbfile/codecs/BBGenePredCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#1ada7810b33e59ab34997d66ace9b0787077e165" style="color: #1068bf;">
<span class="deleted-file">

src/main/java/org/broad/igv/bbfile/codecs/BBNarowPeakCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#3f345e893aef01819892616511e1741989e3206b" style="color: #1068bf;">
<span class="new-file">
+
src/main/java/org/broad/igv/bbfile/codecs/BBRmskCodec.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#4fa7e6a9fa80783e181ca7eb76bc773e372468f4" style="color: #1068bf;">
src/main/java/org/broad/igv/feature/AbstractFeature.java
</a>
</li>
<li class="file-stats">
<a href="#f69db8943227236b9cd61047ca2d04262df306b8" style="color: #1068bf;">
src/main/java/org/broad/igv/feature/AbstractFeatureParser.java
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">The diff was not included because it is too large.</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">

<br>
<a href="https://salsa.debian.org/med-team/igv/-/compare/17e214b8b362d462e5a00ccf6ea9ee43e12dcc20...eb4822fb2fc1efe2ec950e5c6b4047e435620d50" style="color: #1068bf;">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.



</p>
</div>
</body>
</html>