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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/fastqtl" style="color: #1068bf;">Debian Med / fastqtl</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/d363c3e22c4a5450eea9d34c4e4c4b8789032479" style="color: #1068bf;">d363c3e2</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T10:31:43+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Package enhanced version of fastqtl
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/1fb0a51cc83b5fa0741d221bd8cf5f5f34b97195" style="color: #1068bf;">1fb0a51c</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T10:32:03+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 2.184v7</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/9460bf9fb372700cb717da72a88170a346d3a279" style="color: #1068bf;">9460bf9f</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T10:32:09+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/2.184v7'
Update to upstream version '2.184v7'
with Debian dir 6efecbe3183725f4036b8a44f18be7505e2250f7</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/66f10d29de68819499e2c1650e661512fa1bf1b4" style="color: #1068bf;">66f10d29</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T10:34:35+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Fix watch file
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/3e35be48e51ba4c65aac7be6f342796132409e5b" style="color: #1068bf;">3e35be48</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T10:34:59+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Adapt changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/c167c1489bb1ee914bcb18cae34193c3837c1622" style="color: #1068bf;">c167c148</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:06:22+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Adapt to new upstream features
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/d22280f6d7e6e6a005d0cfe42bfb6b84c656e01a" style="color: #1068bf;">d22280f6</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:06:48+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Standards-Version: 4.6.1
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/3c37c790d61f340112a1b579cd6fcae80ba9e3da" style="color: #1068bf;">3c37c790</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:06:53+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/d6c12a6991f498febb3781b055185b2e36bcbd8c" style="color: #1068bf;">d6c12a69</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:06:54+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Add missing ${misc:Depends} to Depends for fastqtl.
Changes-By: lintian-brush
Fixes: lintian: debhelper-but-no-misc-depends
See-also: https://lintian.debian.org/tags/debhelper-but-no-misc-depends.html
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/7544ec5f2f8ab8f544bf70d2f10e1b95346db443" style="color: #1068bf;">7544ec5f</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:07:08+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/3ebe9f3e5aadaa607d9a1eca3db656ec87b3feaa" style="color: #1068bf;">3ebe9f3e</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:10:23+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Add missing repacksuffix
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/6c34ffd0b461b505f013c715c35e3a1f804953c3" style="color: #1068bf;">6c34ffd0</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:10:55+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 2.184v7+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/f0b04b979e4bc185ca7f09019a9024949abe07ce" style="color: #1068bf;">f0b04b97</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:11:01+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/2.184v7+dfsg'
Update to upstream version '2.184v7+dfsg'
with Debian dir a1e463c7d412e2ce5d4fc7225584468785f8e432</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/521b2fb7b22b4129b0f2d405c3bdb959ae84a555" style="color: #1068bf;">521b2fb7</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:15:16+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>DEP3
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/4a3b44b74d25c6a072e7d25d69aa7a4bd95c7ce6" style="color: #1068bf;">4a3b44b7</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:15:39+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Fix typo
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/8899b4deb2c6979788a2b2f40a08313e8541e438" style="color: #1068bf;">8899b4de</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:19:28+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Fix lintian-overrides
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/7ada77ae4dd0ae6d0d96470098b87a3da91ba273" style="color: #1068bf;">7ada77ae</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:20:29+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Fix permissions
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/f71b3c3361c1ff9513b0c1fcdf75ee6437d61051" style="color: #1068bf;">f71b3c33</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:21:29+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>ignore false positive
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/2fdae55024c6a6096f733e9426610d3f62cb3438" style="color: #1068bf;">2fdae550</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:40:44+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>add dh-python
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqtl/-/commit/8c36778c14e9810b63152bdb4294f85f5f7f4053" style="color: #1068bf;">8c36778c</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-10-05T11:43:58+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c" style="color: #1068bf;">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#bdd4ea849cf7779a2ee13a104e786b7ef60d138d" style="color: #1068bf;">
<span class="new-file">
+
R/calculateSignificanceFastQTL.R
</span>
</a>
</li>
<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1" style="color: #1068bf;">
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−
README
</span>
</a>
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d" style="color: #1068bf;">
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README.md
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</a>
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<a href="#cf9802e192b48f765b1b5c8268d550d89c933053" style="color: #1068bf;">
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debian/README.source
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</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf;">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2" style="color: #1068bf;">
debian/control
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<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb" style="color: #1068bf;">
debian/copyright
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<a href="#3f8ec4783fa2178f921805439cf7c743fd352306" style="color: #1068bf;">
debian/fastqtl-doc.install
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debian/fastqtl.install
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<a href="#19e2366f99ceaa611ad691f13edecea1b14b1e75" style="color: #1068bf;">
debian/fastqtl.lintian-overrides
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<li class="file-stats">
<a href="#f160ada904d61dff870a676682fe48bdd9beb03e" style="color: #1068bf;">
debian/patches/01_Makefile_dynamic_hardenings.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96" style="color: #1068bf;">
debian/patches/series
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<a href="#fe0d817eba12186bfed76ee0727497f0e1b2f78b" style="color: #1068bf;">
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debian/patches/set_path.patch
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debian/rules
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<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61" style="color: #1068bf;">
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debian/salsa-ci.yml
</span>
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debian/source/lintian-overrides
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debian/upstream/metadata
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debian/watch
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python/merge_chunks.py
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python/run_FastQTL_threaded.py
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<a href="#0769690e33748734fd91c720aea86a5260f124c9" style="color: #1068bf;">
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python/run_chunk.py
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python/sort_index_pairs.py
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script/calulateNominalPvalueThresholds.R
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<a href="#9ad195375819cb1846f98837ee77b5ff216d025b" style="color: #1068bf;">
src/analysisNominal.cpp
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src/analysisNominalBest.cpp
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src/analysisPermutation.cpp
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src/data.h
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src/fastQTL.cpp
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