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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch upstream at <a href="https://salsa.debian.org/med-team/salmon" style="color: #1068bf;">Debian Med / salmon</a>
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Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/salmon/-/commit/471a464d6442e1b0faa504217bf831285b69c85f" style="color: #1068bf;">471a464d</a></strong>
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<span> by Étienne Mollier </span> <i> at 2022-10-28T18:25:51+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 1.9.0+ds1</pre>
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30 changed files:
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<a href="#762d7ccaead4b306c37a6a16532be092f3a7d97d" style="color: #1068bf;">
.drone.yml
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<a href="#38df0d119dd4bbf9324a89a5240408ff37d2bfb3" style="color: #1068bf;">
.drone/build.sh
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<a href="#b947ed687b5465d7937a634a67f29920545f25dc" style="color: #1068bf;">
.drone/test_quant.sh
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae" style="color: #1068bf;">
CMakeLists.txt
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<a href="#3f454a98e586d1aa0d322e19afd5e67e08f2d3c8" style="color: #1068bf;">
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CONTRIBUTING.md
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d" style="color: #1068bf;">
README.md
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<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8" style="color: #1068bf;">
current_version.txt
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<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525" style="color: #1068bf;">
doc/source/conf.py
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<a href="#d2512a023edf5bc0bc15dc59b6ac10eae6a5dd2d" style="color: #1068bf;">
doc/source/salmon.rst
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<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61" style="color: #1068bf;">
docker/Dockerfile
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<a href="#3cbc10c17d78796adbdc9a8a8b8702f83a02d41f" style="color: #1068bf;">
docker/build_test.sh
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<a href="#5cef8fa5ec1ece7a48a7915ced5deaf811bf19f5" style="color: #1068bf;">
include/AlignmentLibrary.hpp
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<a href="#6a7f6f8853f86b38813cb42fd1e8bc1a007ae385" style="color: #1068bf;">
include/AlignmentModel.hpp
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<a href="#2ac0e90145df8287bf8f2694a3e2af65d0939b0b" style="color: #1068bf;">
include/AtomicMatrix.hpp
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<a href="#80185316fe3b1f661a84dc01d133b5fb610d6061" style="color: #1068bf;">
include/BAMQueue.hpp
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<a href="#96a6d349faec8965a43df7703931ac525f2a6234" style="color: #1068bf;">
include/FragmentStartPositionDistribution.hpp
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<a href="#b29cf865d562fb27e02f30ea8c76bc9567d68ab6" style="color: #1068bf;">
include/GenomicFeature.hpp
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<a href="#aeceb8587358fea12358c14d0f1ce237adfb9cec" style="color: #1068bf;">
include/MiniBatchInfo.hpp
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<a href="#0f80b0539693fb3b3cb030033c49f5a6d49d0af8" style="color: #1068bf;">
include/ONTAlignmentModel.hpp
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<a href="#341760d914f801209e4565312ffdda17e8f528df" style="color: #1068bf;">
include/OutputUnmappedFilter.hpp
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<a href="#b28e1098f756957ff90d12768200c4e9602817b4" style="color: #1068bf;">
include/SalmonConfig.hpp
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<a href="#44e448f604f7e82906787f365f589a3ea4657ba9" style="color: #1068bf;">
include/SalmonDefaults.hpp
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<a href="#2eeada36706cad6f17cb60346f7d2f9f4b479a7b" style="color: #1068bf;">
include/SalmonOpts.hpp
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<a href="#0c4db41611a51a682d0d085f02905ac18c219b88" style="color: #1068bf;">
include/SalmonUtils.hpp
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<a href="#ce3a50cf35cf7f12a5dfa968fc323211ab21cf88" style="color: #1068bf;">
include/Sampler.hpp
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<a href="#184bad7a7f61e5b90bb33c4c7972a8a2aab203c5" style="color: #1068bf;">
include/SequenceBiasModel.hpp
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<a href="#8a4fb665ab157039dcefcd2104e0f2d775463fd3" style="color: #1068bf;">
include/WhiteList.hpp
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<a href="#d9225c32d4f01af48593b4d164c0276ef713fb37" style="color: #1068bf;">
scripts/fetchPufferfish.sh
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<a href="#76800b159161b60d26cd4d5a84b3ace2f0cafcf0" style="color: #1068bf;">
scripts/make-release.sh
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<a href="#2d5e0752f505025e2570ff24aee737c61f0ebcdd" style="color: #1068bf;">
src/BuildSalmonIndex.cpp
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The diff was not included because it is too large.
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