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Andreas Tille pushed to branch upstream at <a href="https://salsa.debian.org/med-team/muscle3" style="color: #1068bf;">Debian Med / muscle3</a>
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Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/muscle3/-/commit/215020623e903e5488afe10eb9058570108a5e8e" style="color: #1068bf;">21502062</a></strong>
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<span> by Andreas Tille </span> <i> at 2022-11-24T09:23:53+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 3.8.1551</pre>
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