<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/unicycler" style="color: #1068bf;">Debian Med / unicycler</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/unicycler/-/commit/5c22f93746b7cf262e4efec412b0d402506e09dc" style="color: #1068bf;">5c22f937</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-12-06T16:10:44+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Fix watch file
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/unicycler/-/commit/14c9395a4d2a0f1b03f95dc9e3f55f2e4be5af35" style="color: #1068bf;">14c9395a</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-12-06T16:11:13+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/unicycler/-/commit/fef5eee21d2b2579f6a0c6c464fe7169bbd0fa82" style="color: #1068bf;">fef5eee2</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-12-06T16:11:14+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 0.5.0+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/unicycler/-/commit/04d00c59ff5ef3e953c89cb8ae5af908e4624ea6" style="color: #1068bf;">04d00c59</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-12-06T16:11:23+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/0.5.0+dfsg'
Update to upstream version '0.5.0+dfsg'
with Debian dir 54d66603b673d1922709d0f07040a3f080bb7908</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/unicycler/-/commit/092b5f007b6f0efe8a5c385563dd0d3ad05772e2" style="color: #1068bf;">092b5f00</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-12-06T16:15:44+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Refresh patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/unicycler/-/commit/574ffd5cb14411815794f4a5a14a5af3e495df37" style="color: #1068bf;">574ffd5c</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-12-06T16:17:10+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Adjust versioned dependency spades (>= 3.14)
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/unicycler/-/commit/62572edf5e3c0fbfc06323616763f4b73900be6f" style="color: #1068bf;">62572edf</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-12-06T16:28:14+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c" style="color: #1068bf;">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d" style="color: #1068bf;">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1" style="color: #1068bf;">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2" style="color: #1068bf;">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#e67eff5235e29f7a320f399282e20e55654a0abf" style="color: #1068bf;">
debian/patches/append_flags
</a>
</li>
<li class="file-stats">
<a href="#15bfcb77ce131958355b74b4b593657d75c9fc46" style="color: #1068bf;">
debian/patches/install_wo_extra_steps.patch
</a>
</li>
<li class="file-stats">
<a href="#69079773d30c2f1c57281d76c3dca3a2349807e9" style="color: #1068bf;">
debian/patches/spades.patch
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79" style="color: #1068bf;">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#26b995d124ccd0d0ba207c352eb6526acdc23b1f" style="color: #1068bf;">
<span class="deleted-file">
−
docs/unicycler-align.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#e26bc61a802732c8494136a871644d928e1776bb" style="color: #1068bf;">
<span class="deleted-file">
−
docs/unicycler-check.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#09900232f8b5007cc6515613f2702ebb76b1b928" style="color: #1068bf;">
<span class="deleted-file">
−
docs/unicycler-polish.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#5f3464eff5b81253f89c17876423f706fa1b8df8" style="color: #1068bf;">
<span class="deleted-file">
−
docs/unicycler-scrub.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#e94fedda76d46b1b76f2d1707d3eade0d9e7e82f" style="color: #1068bf;">
misc/bridge_application.png
</a>
</li>
<li class="file-stats">
<a href="#ff5e1766634db380230015ec46cb870c86840f0b" style="color: #1068bf;">
misc/conservative_normal_bold.png
</a>
</li>
<li class="file-stats">
<a href="#64e68402b3fd9cdcc45ac2ba4f16273350816db9" style="color: #1068bf;">
misc/depth.png
</a>
</li>
<li class="file-stats">
<a href="#9e1fdeca33dd0d9b710f6a810c19fade664c2170" style="color: #1068bf;">
misc/illumina_graph_comparison.png
</a>
</li>
<li class="file-stats">
<a href="#99c0a4c01e592bf3e886061691022b432f90684b" style="color: #1068bf;">
misc/k-mer_plot.png
</a>
</li>
<li class="file-stats">
<a href="#670c140dc2057dde2d613db2b2d39a0911f016ba" style="color: #1068bf;">
misc/logo.png
</a>
</li>
<li class="file-stats">
<a href="#01365fff715ae680a34fe89e8790f0c7946a5026" style="color: #1068bf;">
misc/long_read_bridging.png
</a>
</li>
<li class="file-stats">
<a href="#2f52f253d28b12b71332a9cabc487520027ca872" style="color: #1068bf;">
misc/multiplicity.png
</a>
</li>
<li class="file-stats">
<a href="#798d581c1a8c1ee35164c74b72d6ba2c5623f7e4" style="color: #1068bf;">
misc/read_length.png
</a>
</li>
<li class="file-stats">
<a href="#dc2b1211f8cb02eaf0e81f78f16edfcad5d03641" style="color: #1068bf;">
misc/repeats_in_graph.png
</a>
</li>
<li class="file-stats">
<a href="#13e8af3415a4e57d661b7b5cf2a9590ce3846086" style="color: #1068bf;">
misc/short_contigs.png
</a>
</li>
<li class="file-stats">
<a href="#35c9ec7ead43243c8d20a85ed01d1abc624bb270" style="color: #1068bf;">
misc/short_read_bridging.png
</a>
</li>
<li class="file-stats">
<a href="#e8ac1c40f79ee27df7e8b9fe7168d7e9b14a51ef" style="color: #1068bf;">
sample_data/README.md
</a>
</li>
<li class="file-stats">
<a href="#c156ef4512d9cab0a3573f36a84ee01fa3893d8a" style="color: #1068bf;">
<span class="deleted-file">
−
scripts/pilon_polish.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8" style="color: #1068bf;">
setup.py
</a>
</li>
<li class="file-stats">
<a href="#4dca1f6a2815a84849af7b52a390efea0bf2ca71" style="color: #1068bf;">
test/overlap_removal_test.py
</a>
</li>
<li class="file-stats">
<a href="#b36f3f1bb39646e2fcf7bd1143da84dafd50aea6" style="color: #1068bf;">
test/random_sequence_assembly_test.py
</a>
</li>
<li class="file-stats">
<a href="#fd0d73c829bd86f401d0482417f5244e840812a6" style="color: #1068bf;">
test/test_assembly_graph.gfa
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/unicycler/-/compare/22666259b329533706895e1469ea3de70fe62241...62572edf5e3c0fbfc06323616763f4b73900be6f" style="color: #1068bf;">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org" style="color: #1068bf;">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link" style="color: #1068bf;">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link" style="color: #1068bf;">Help</a>
</p>
</div>
</body>
</html>