<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream at <a href="https://salsa.debian.org/med-team/toil" style="color: #1068bf;">Debian Med / toil</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/toil/-/commit/8d5c635defdad60db05b60e83f88bac79f3e89a7" style="color: #1068bf;">8d5c635d</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2022-12-06T15:57:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 5.7.1</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c" style="color: #1068bf;">
.gitlab-ci.yml
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c" style="color: #1068bf;">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#ccd878cd594c7f4853c66e53a9d164a65e83fa2e" style="color: #1068bf;">
attic/README.md
</a>
</li>
<li class="file-stats">
<a href="#1a86abc3ec747473c3837236573ac86517bdc99e" style="color: #1068bf;">
contrib/admin/cleanup_aws_resources.py
</a>
</li>
<li class="file-stats">
<a href="#889c91308449c65c309146f6487ae74af64de5e9" style="color: #1068bf;">
contrib/admin/mypy-with-ignore.py
</a>
</li>
<li class="file-stats">
<a href="#f29f7678cfd2b3e6e716dff5b56d7878db6144b7" style="color: #1068bf;">
<span class="new-file">
+
contrib/hooks/lib.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#299433c29e6b9bf622f1c04eb115298fbe7e77c9" style="color: #1068bf;">
<span class="new-file">
+
contrib/hooks/mypy-after-commit.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#070d81077e37ad2947cfe4314b24fd49be0b48d4" style="color: #1068bf;">
<span class="new-file">
+
contrib/hooks/mypy-before-push.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#9e317a98939455a895091495f671f338e260b85c" style="color: #1068bf;">
<span class="new-file">
+
contrib/pod-murder-bot/murder.yaml
</span>
</a>
</li>
<li class="file-stats">
<a href="#a4d4153c086b976e076e35b8f92d099a1617f2cc" style="color: #1068bf;">
<span class="new-file">
+
contrib/pod-murder-bot/podKiller.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#5bafdcb13268019d7dbeff10d85920758c72ebab" style="color: #1068bf;">
contrib/typeshed/dill/_dill.pyi
</a>
</li>
<li class="file-stats">
<a href="#4f586be58f5e6019d9c8afff5db0546c7d1808de" style="color: #1068bf;">
dashboard/grafana/toil_dashboard.json
</a>
</li>
<li class="file-stats">
<a href="#ca92771f4530498a35ad223cc46b31bdbc0157f6" style="color: #1068bf;">
dashboard/mtail/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#734cb112ea615891b9ef15d07ae7bc1dee10abc3" style="color: #1068bf;">
docker/Dockerfile.py
</a>
</li>
<li class="file-stats">
<a href="#26c5d7bf4eed025b57f1545762565cf8c8cb73ca" style="color: #1068bf;">
<span class="new-file">
+
docker/singularity-sources.tsv
</span>
</a>
</li>
<li class="file-stats">
<a href="#f99c72d2aacbf31ded1872c66de3f988dced0301" style="color: #1068bf;">
docs/appendices/environment_vars.rst
</a>
</li>
<li class="file-stats">
<a href="#abd8589b4d5ee2ea66ee95d8caf4e8759ffb9ce0" style="color: #1068bf;">
docs/contributing/contributing.rst
</a>
</li>
<li class="file-stats">
<a href="#9b7b19eaf87ceb524470a920a457425b602cd816" style="color: #1068bf;">
docs/developingWorkflows/toilAPIBatchsystem.rst
</a>
</li>
<li class="file-stats">
<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a" style="color: #1068bf;">
docs/running/cliOptions.rst
</a>
</li>
<li class="file-stats">
<a href="#9d336859ebc50ce12f946e32de94343f00be9ebb" style="color: #1068bf;">
docs/running/cloud/clusterUtils.rst
</a>
</li>
<li class="file-stats">
<a href="#d50f3b306f058ff65070956e91042db45c249d68" style="color: #1068bf;">
<span class="deleted-file">
−
docs/running/server/Dockerfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#82be9fed605db0614e4f7450c4fdf3ff4a3b8c3e" style="color: #1068bf;">
docs/running/server/docker-compose.yml
</a>
</li>
<li class="file-stats">
<a href="#c5d7964ea3686ec9493493d76844305b3f84baab" style="color: #1068bf;">
docs/running/server/wes.rst
</a>
</li>
<li class="file-stats">
<a href="#94ef85ac03a9b3926d1726c51aaf7e720200965d" style="color: #1068bf;">
requirements-aws.txt
</a>
</li>
<li class="file-stats">
<a href="#b1f2507748c66f157346e017893778f0bef7bab0" style="color: #1068bf;">
requirements-cwl.txt
</a>
</li>
<li class="file-stats">
<a href="#f4fb69164b97e1b6f17984369c9c382573a3f919" style="color: #1068bf;">
requirements-dev.txt
</a>
</li>
<li class="file-stats">
<a href="#ba1737f2ce7d642bbfa3bdf256e038820d8cc5ca" style="color: #1068bf;">
requirements-google.txt
</a>
</li>
<li class="file-stats">
<a href="#8f82779feb90c0fb03a473c5e041127d75b7becd" style="color: #1068bf;">
requirements-server.txt
</a>
</li>
<li class="file-stats">
<a href="#8c91c0296909b5ea3c496fde69e9dc44a6c6ae5f" style="color: #1068bf;">
setup.cfg
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8" style="color: #1068bf;">
setup.py
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/toil/-/commit/8d5c635defdad60db05b60e83f88bac79f3e89a7" style="color: #1068bf;">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org" style="color: #1068bf;">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link" style="color: #1068bf;">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link" style="color: #1068bf;">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/toil/-/commit/8d5c635defdad60db05b60e83f88bac79f3e89a7"}}</script>
</p>
</div>
</body>
</html>