<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Sascha Steinbiss pushed to branch master at <a href="https://salsa.debian.org/med-team/rna-star">Debian Med / rna-star</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/rna-star/-/commit/89e511619950f991efd95a5a581ee65a840673d3">89e51161</a></strong>
<div>
<span> by Sascha Steinbiss </span> <i> at 2022-12-27T02:18:28+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 2.7.10b+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/rna-star/-/commit/af3a5b7101a929d1928fb50308ff399edcc08975">af3a5b71</a></strong>
<div>
<span> by Sascha Steinbiss </span> <i> at 2022-12-27T02:18:29+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/2.7.10b+dfsg'
Update to upstream version '2.7.10b+dfsg'
with Debian dir e281a7aa9f9d83781a8e3d2760edf7c9507d642f</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/rna-star/-/commit/a880cfe0460e2d53a0f6861b8bcbad3794c2ac8f">a880cfe0</a></strong>
<div>
<span> by Sascha Steinbiss </span> <i> at 2022-12-27T10:15:44+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>new upstream release
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="new-file">
+
.travis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#fb1b39277cfb15327cea71551d0bbf7643e216f4">
RELEASEnotes.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#baa2673d68231af2b9e6f7337d851edb943da22c">
debian/patches/gcc-12.patch
</a>
</li>
<li class="file-stats">
<a href="#1d6ebb42152a3125296c8f3df8bc34651da72448">
doc/STARmanual.pdf
</a>
</li>
<li class="file-stats">
<a href="#0e92e2511c1a55ce1db2a846d4399f9fe68a71fe">
docs/STARsolo.md
</a>
</li>
<li class="file-stats">
<a href="#5a5668ccb427693fe0e7ea2e054229206cb91b0a">
extras/doc-latex/STARmanual.tex
</a>
</li>
<li class="file-stats">
<a href="#8955c7301dc01c7f9b2a350f2aee6066e91f8f83">
extras/docker/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#d25356e3e77dc178a1e7f8dde504b75943174ff4">
extras/scripts/sjFromSAMcollapseUandM.awk
</a>
</li>
<li class="file-stats">
<a href="#df5a5eb1fe97c58681a425d56f8c64a59ce031f9">
extras/scripts/sjFromSAMcollapseUandM_inclOverlaps.awk
</a>
</li>
<li class="file-stats">
<a href="#385d57a3ccf42a0b7462635b147b385a25e91797">
source/Genome.cpp
</a>
</li>
<li class="file-stats">
<a href="#6ae9e88712056a2abd55911f4d3a7d8b8145819c">
source/Makefile
</a>
</li>
<li class="file-stats">
<a href="#8446bcce87bc8a78f6d2ffabef5990a854c1c29b">
source/OutSJ.cpp
</a>
</li>
<li class="file-stats">
<a href="#8ffb17dd469f4a949b2b3786c61d1e5dd04fd161">
source/OutSJ.h
</a>
</li>
<li class="file-stats">
<a href="#47400d5368eac693c6bfbf23c7c88692d933b447">
source/ParametersClip_initialize.cpp
</a>
</li>
<li class="file-stats">
<a href="#bf27f52254916f0127a15b2aa4242b8679bb9815">
source/ParametersSolo.cpp
</a>
</li>
<li class="file-stats">
<a href="#924480e837c06acd1472c069adb0bb8cae0b6bc1">
source/ParametersSolo.h
</a>
</li>
<li class="file-stats">
<a href="#a65bb3bc4e4db0e24eae08bd0218daa68661e87d">
source/ReadAlignChunk_mapChunk.cpp
</a>
</li>
<li class="file-stats">
<a href="#4896a67af34962395106d0bd2c41b227ffde5a58">
source/STAR.cpp
</a>
</li>
<li class="file-stats">
<a href="#db0fa6abaeeef5d64004a11dfa268e76c87cf873">
source/SharedMemory.cpp
</a>
</li>
<li class="file-stats">
<a href="#6e52cf07d4f41150d4ef4085d2c0153bde9a4143">
source/Solo.cpp
</a>
</li>
<li class="file-stats">
<a href="#33f45b79f1f9bda8465b510723d68b41620cc2dd">
source/SoloCommon.h
</a>
</li>
<li class="file-stats">
<a href="#a07535cc3e424fd952a19552c54a5316233fe882">
source/SoloFeature.cpp
</a>
</li>
<li class="file-stats">
<a href="#98c393866800d04da4ea79fd64781006cb0713ab">
source/SoloFeature.h
</a>
</li>
<li class="file-stats">
<a href="#2ce04271e5214fcd449bb4917e94be04695c6534">
source/SoloFeature_cellFiltering.cpp
</a>
</li>
<li class="file-stats">
<a href="#2eb361a8154aea66a88a8c736df011ba1791ece4">
source/SoloFeature_collapseUMIall_multiMappers.cpp
→
source/SoloFeature_collapseUMIall.cpp
</a>
</li>
<li class="file-stats">
<a href="#cdd32f9d8482d3ed4dcf417b097e26a0fa9015c5">
source/SoloFeature_countCBgeneUMI.cpp
</a>
</li>
<li class="file-stats">
<a href="#877790dc0721559ff2e8ca240f1bfcba8fdfc429">
source/SoloFeature_countVelocyto.cpp
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/rna-star/-/compare/8e58df5c0e2332e38b9ecf159d06fcf28ac99aea...a880cfe0460e2d53a0f6861b8bcbad3794c2ac8f">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
</p>
</div>
</body>
</html>