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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/31c2588e543344bf5849931055c1815c14a3b74b">31c2588e</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-11T06:41:02+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>throttler was accepted
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/1e92a6a549599eba9e14d5e7be77e9cd9bf723b5">1e92a6a5</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-11T06:41:24+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 7.19.1</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/940d722f86e89a33cef8d7ab5df02698576a29e9">940d722f</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-11T06:41:24+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/a7def4bcf60c3572373ecfe6745888df3d431907">a7def4bc</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-11T06:41:47+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/7.19.1'
Update to upstream version '7.19.1'
with Debian dir 3d6202da8437f957026ed1746ea8daa03b4acaa6</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/eef18345eef74c59e09e209d578949bf22b53478">eef18345</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-11T06:41:48+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/f645c065d61b4121857d325bbb918456c6f8d920">f645c065</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-11T07:29:09+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Refresh patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/639c14147e53654fece5612fb8ef22b53f149958">639c1414</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-11T08:21:03+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'> * Skip slurm tests since slurm is not setup at build time
* Suggests: slurm-client
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/fc405aa83d8b8a8f4449d2b99d63b41a2fee7cd3">fc405aa8</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-11T08:45:31+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Skip lint test that is known to fail
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/8b0906316e05768a9638948aee04ba5f95e9b319">8b090631</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-11T08:50:38+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Skip workflow test that is known to fail
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0">
.github/workflows/main.yml
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<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#135ec01bd10e1ae371b58cf95c485e05336f96b4">
debian/patches/cirumvent-retry.patch
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<a href="#e246f69e945a7c2e9a8e25cfacfcac7714c92b69">
debian/patches/python3.patch
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<a href="#8f735a93bb087196e4fdf34f28d1de6782e8d849">
debian/patches/remove-yte.patch
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<a href="#aef4fc475d9c2698d0de9e80b3256895c791f41e">
debian/patches/remove_ccbysa_snippets.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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debian/patches/skip-test-lint_long_run.patch
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debian/patches/skip-test_workflow_calling.patch
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debian/patches/skip-tests-with-internet.patch
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debian/patches/skip-tests-with-slurm.patch
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debian/patches/test_from_any_directory.patch
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<a href="#7e143b2e3a88fc7b437114c03b2302f5afa981ec">
docs/executing/cloud.rst
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<a href="#9e4177ae5c810ed5bbbf8563e9a91dfc95913981">
docs/executing/cluster.rst
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docs/snakefiles/remote_files.rst
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docs/snakefiles/rules.rst
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<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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snakemake/__init__.py
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snakemake/_version.py
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snakemake/common/__init__.py
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snakemake/dag.py
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snakemake/exceptions.py
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snakemake/executors/__init__.py
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snakemake/executors/slurm/slurm_submit.py
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snakemake/jobs.py
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snakemake/logging.py
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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