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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/resfinder">Debian Med / resfinder</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/resfinder/-/commit/b6d2465968e4939f1f5f698efaf513748fc1a2aa">b6d24659</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-17T16:56:01+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>python-cgelib in salsa
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/resfinder/-/commit/9d8bb45e98d143c60e9fc3ef61e7576a204142fa">9d8bb45e</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-17T16:56:22+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/resfinder/-/commit/8c3f5cf4fb7e3496a2327757164249ffd776967f">8c3f5cf4</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-17T17:12:35+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 4.2.4</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/resfinder/-/commit/d36bff330dde473b6f8e42c65638a8132bd0fc75">d36bff33</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-17T17:15:29+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>debian/get-orig-source fetches data together with uscan
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/resfinder/-/commit/1eb251926030c03dde9ebc62074516faa25ba36c">1eb25192</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-17T17:15:37+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 4.2.4</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/resfinder/-/commit/0ef8059e3770daf23505fe9e710acea4bac818d3">0ef8059e</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-01-17T17:15:39+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/4.2.4'
Update to upstream version '4.2.4'
with Debian dir fab1ab8bb72441673e4fe0629e51f9bdc6be108b</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
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<li class="file-stats">
<a href="#aeff0d8cd2a99e7a49e5bef71558af5e558bdd00">
<span class="new-file">
+
DEV_SETUP.md
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</li>
<li class="file-stats">
<a href="#01f9c4f9a85f5ab18506f33aaaa66a1bd1832b09">
debian-tests-data/db_resfinder/VERSION
</a>
</li>
<li class="file-stats">
<a href="#0a9294ddae5adad7791e97cc0a353645b4a53024">
debian-tests-data/db_resfinder/macrolide.fsa
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<li class="file-stats">
<a href="#5a03f8d62984322823ae01a5cf79ec787b8b5cca">
debian-tests-data/db_resfinder/oxazolidinone.fsa
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<li class="file-stats">
<a href="#33b5a31bc9d06e3f1f1dcb1c4e1f3adc09d60ecf">
debian-tests-data/db_resfinder/quinolone.fsa
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#fc932f0eaa389a4e2b93916f3995aae4019ea823">
<span class="new-file">
+
debian/get-orig-source
</span>
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#0e9418a52713c2cf65a28de530bba2247ab2237f">
debian/tests/get-test-data
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#558c49b604560afd1841f2a7b49e2f60bd1f99b3">
dockerfile
</a>
</li>
<li class="file-stats">
<a href="#a360db63bcd2451e812b22a97be29e9f9ae66b24">
src/resfinder/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#f79c2a62758e89e097d371ea2bc126d47e398429">
src/resfinder/amr_abbreviations.md
</a>
</li>
<li class="file-stats">
<a href="#7a86e49d682f409f269dfd11754c056691413853">
src/resfinder/cge/config.py
</a>
</li>
<li class="file-stats">
<a href="#159a1fe4a9900b7940f55dbc861a494a1eda9ee8">
src/resfinder/cge/output/gene_result.py
</a>
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<li class="file-stats">
<a href="#4a2121f610809ea7f7aa3e07c2adcf1ce9658254">
src/resfinder/cge/output/phenotype_result.py
</a>
</li>
<li class="file-stats">
<a href="#05bdecddc3f484b46e32d76dfa00303adf5b874b">
src/resfinder/cge/output/seq_variation_result.py
</a>
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<li class="file-stats">
<a href="#849a8de2dfd0cd73eee3cea40b6810ecbb7c826e">
src/resfinder/cge/output/std_results.py
</a>
</li>
<li class="file-stats">
<a href="#1a8f73cf5a7104593ce2f53043fb504b48fe547f">
src/resfinder/cge/phenotype2genotype/feature.py
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</li>
<li class="file-stats">
<a href="#1e0060ebb2aa5894cfa983b3134781cafab688e4">
src/resfinder/cge/phenotype2genotype/isolate.py
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<li class="file-stats">
<a href="#a54b26b7e3b9128f3258376f7d424ca93931ea3a">
src/resfinder/cge/phenotype2genotype/res_profile.py
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<li class="file-stats">
<a href="#c2adf0e46add17af95208b933db24293fda09133">
src/resfinder/cge/pointfinder.py
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<li class="file-stats">
<a href="#5ad0f45f3900f22976b7ea5089638e2632210247">
src/resfinder/run_resfinder.py
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<li class="file-stats">
<a href="#05a163a894051714f48b38d9f99d85ef3f50bba5">
<span class="new-file">
+
tests/data/test_isolate_11.fa
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<li class="file-stats">
<a href="#6cceb9a181f10319f3547468fe347ac43fe52f57">
<span class="new-file">
+
tests/data/test_isolate_11_1.fq
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</a>
</li>
<li class="file-stats">
<a href="#3849ce6d66e0b3ccfb357f14cf2a4e3933a72508">
<span class="new-file">
+
tests/data/test_isolate_11_2.fq
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</a>
</li>
<li class="file-stats">
<a href="#45073d5a727ae0b6bdbd1a42534c30ec6ba80cd5">
tests/resfinder/cge/output/test_phenotype_result.md
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<li class="file-stats">
<a href="#b6316ebadbebd26c66e845b996293f442557e1e1">
tests/resfinder/cge/output/test_seq_variation_result.md
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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<a href="https://salsa.debian.org/med-team/resfinder/-/compare/6faa69c0de919d05023aadf855dc148dda7b1e88...0ef8059e3770daf23505fe9e710acea4bac818d3">View it on GitLab</a>.
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