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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/drop-seq">Debian Med / drop-seq</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/4f6bae3860dbc6794ebaba7dd37b7cb7515975c0">4f6bae38</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-01-22T09:10:13+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 2.5.2+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/08090daf8dec38c1468bed508a1d4a1a24403d46">08090daf</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-01-22T09:12:21+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/2.5.2+dfsg'
Update to upstream version '2.5.2+dfsg'
with Debian dir bda00e1ad06cf0f899b8fccdad61f2524bf7682b</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/538054412fd2455d6f401049ac97dd0c8827796b">53805441</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-01-22T09:14:57+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Dropping unexisting java-runtime package from the list of runtime dependencies
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/d63162a8edbd149944e478f5c99e36859fca90de">d63162a8</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-01-22T09:18:25+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Refreshing d/copyright
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/8cbbd4a3d24c394fa9bf98b6e4f72c20bb7e3850">8cbbd4a3</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-01-22T09:19:06+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/a1aaded58271ad0f43a0f76fc67a04382ffd1992">a1aaded5</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-01-22T09:19:15+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Upload to unstable
</pre>
</li>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
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debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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src/ant/defs.xml
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src/java/org/broadinstitute/dropseqrna/annotation/CompareAnnotationFlags.java
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src/java/org/broadinstitute/dropseqrna/annotation/FunctionalDataProcessor.java
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<a href="#3fc29742029b59ebe687374cc84905308eef17b0">
src/java/org/broadinstitute/dropseqrna/barnyard/DGECommandLineBase.java
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<a href="#2b9909c5b5a360e211167af9b686a599ea5d6681">
src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java
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src/java/org/broadinstitute/dropseqrna/barnyard/DownsampleTranscriptsAndQuantiles.java
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<a href="#b7ea49725999e61f0bdf16c415245903969406ca">
src/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGene.java
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src/java/org/broadinstitute/dropseqrna/barnyard/UMICollectionByCellParser.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java
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<a href="#5eb1e45250b8c5b84727a387522f0f44ecc64cf6">
src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtils.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollection.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/DetectDoublets.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/SamplePairAssignmentForCell.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/FilterDge.java
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src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/UMICollection.java
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src/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrors.java
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<a href="#c1d64d06453d67b5a3a769eded322b152657e044">
src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeq.java
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src/java/org/broadinstitute/dropseqrna/censusseq/CommonSNPsData.java
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src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeGradientAdjustment.java
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src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosCommonSNPs.java
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src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosCommonSNPsResult.java
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src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosGradientFunction.java
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src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosLikelihoodFunctionCommonSNPs.java
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src/java/org/broadinstitute/dropseqrna/eqtl/CreateMetaCells.java
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src/java/org/broadinstitute/dropseqrna/eqtl/DonorMergeStrategy.java
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The diff was not included because it is too large.
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<p style="font-size: small; color: #666;">
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