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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/810ab1380e200d6711b0704c1b5073456ec7cde2">810ab138</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-01T16:54:07+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 2.1.0</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/dc30a696e846fa5e52533c3ab74b49de6483305b">dc30a696</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-01T16:54:07+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/eb1ba4cf79403d8be15accbe19e1010e3f093722">eb1ba4cf</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-01T16:54:11+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/2.1.0'
Update to upstream version '2.1.0'
with Debian dir 4322ccf49348dfaac0459b41bb1418e7201ee69f</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/60db8b174c9a1e1ab88da7a64e685233e045922d">60db8b17</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-01T16:54:11+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/5351d170849c5a6f86d107f23252559b88d386bd">5351d170</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-01T17:00:42+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Ready to upload to unstable
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
29 changed files:
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#ba308c53c268704c3008f5e2e6e8129f9f6bf3fe">
src/ChangeLog
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<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">
src/align/align.cpp
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src/align/align.h
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src/align/alt_hsp.cpp
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src/align/culling.cpp
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src/align/culling.h
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src/align/def.h
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src/align/extend.cpp
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<a href="#52ecbb45dea21619756b1951b32ef00fa81a1d54">
src/align/extend.h
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src/align/extend_chunk.h
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src/align/full_db.cpp
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<a href="#b18faac0ee01a4af7eb1b183c49e78e698af5c15">
src/align/gapped_filter.cpp
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<a href="#9fc8681bb50d867858382e8ecdfd9bc32570af85">
src/align/gapped_final.cpp
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<a href="#7540abd0721601ec3b35ecdd671f39ce63cef20f">
src/align/gapped_score.cpp
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src/align/global_ranking/extend.cpp
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<a href="#1b90f5ee8b6ca86e42623b99dcbd74ad0880c831">
src/align/global_ranking/global_ranking.cpp
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<a href="#bf2f09cbd84aa17f89d5db00e4ef7fde6b953c36">
src/align/global_ranking/table.cpp
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src/align/kmer_filter.cpp
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src/align/legacy/banded_swipe_pipeline.cpp
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<a href="#79b081d050ff058cc4444df01970041d95b03792">
src/align/legacy/query_mapper.cpp
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src/align/legacy/query_mapper.h
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src/align/load_hits.h
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src/align/memory.cpp
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src/align/output.cpp
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src/align/short.cpp
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The diff was not included because it is too large.
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<p style="font-size: small; color: #666;">
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