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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/2f54090b09a0483499a6f0a6f812c793375182aa">2f54090b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-02-01T22:36:03+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 2.16.0+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/5bd0a680e157df52a487e500b5cdd7e375a8955e">5bd0a680</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-02-01T22:38:26+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/2.16.0+dfsg'
Update to upstream version '2.16.0+dfsg'
with Debian dir 2e5c1d3a252f902ca80394fa1d0e34e1796113cc</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/ca6c465776f1873974784818be74e258dfeede5b">ca6c4657</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-02-01T22:45:48+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/c2ed81317b64d09946d7ed6edbedf549241d8309">c2ed8131</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-02-01T22:47:38+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Upload to unstable
</pre>
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</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#f9271eab4da87b925b1f65845b9ce74b6c675af3">
debian/patches/gradle_dependencies.patch
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<a href="#c0caa7ba42838b53ff0918c9edff2ea0c0000b18">
debian/patches/omit_aws_stuff.patch
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<a href="#1c89a5491fbfda3fb050196d6a239f20200296e7">
src/main/java/module-info.java
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<a href="#f10a22965c766b6225e4c1388dadfe3e1030fe39">
src/main/java/org/broad/igv/Globals.java
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<a href="#029d37846a4d6800443a8b95c01c8bcd56212922">
src/main/java/org/broad/igv/data/IGVDatasetParser.java
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<a href="#388edaaab74c37eedbbeb19d9c2ecc19e77c90b3">
src/main/java/org/broad/igv/data/seg/FreqData.java
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<a href="#7f7e50a2c9b33428ef305a630511510e0425afde">
src/main/java/org/broad/igv/feature/FeatureUtils.java
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<li class="file-stats">
<a href="#c2346b9ba7f05517d919ca10392e55cb5da2c7f9">
src/main/java/org/broad/igv/feature/PSLRecord.java
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<li class="file-stats">
<a href="#8e61660f1b90c14fd5e0edc481b91810023dd589">
src/main/java/org/broad/igv/feature/genome/GenomeManager.java
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<li class="file-stats">
<a href="#d64f08ec0638199dd3f91750b0724d4e506cb392">
src/main/java/org/broad/igv/feature/tribble/PSLCodec.java
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<a href="#121ac96b8a9d6651bd548009d94eff88d25f0783">
src/main/java/org/broad/igv/prefs/Constants.java
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<a href="#b6466aa10e7d7e3b6bf726325ab65e15a3665c98">
src/main/java/org/broad/igv/prefs/IGVPreferences.java
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<a href="#84a762a0d80469d925f67ada2956fc61b442dcfc">
src/main/java/org/broad/igv/sam/Alignment.java
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<a href="#b0896baad429a066d468d927c8112363a831df88">
src/main/java/org/broad/igv/sam/AlignmentRenderer.java
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<a href="#5085d8485ce8aa700106d65ce66b08b9e2905e46">
src/main/java/org/broad/igv/sam/AlignmentTrack.java
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<a href="#b7190d591220f635d2bd376cf2a467a7405a33d0">
src/main/java/org/broad/igv/sam/AlignmentTrackMenu.java
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<li class="file-stats">
<a href="#6b1cc89bd9353ffe0f0646a9bfc96002757974eb">
src/main/java/org/broad/igv/sam/CoverageTrack.java
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<li class="file-stats">
<a href="#9f250c17613967911b9bfd36f85c773609037f94">
src/main/java/org/broad/igv/sam/ReadStats.java
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<a href="#7bb2e412ad0c95ac96d16788b123c1bbe5c362db">
src/main/java/org/broad/igv/sam/SAMAlignment.java
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<a href="#9b41ed2d07933448882e164d5f60ca11b1153636">
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src/main/java/org/broad/igv/sam/SMRTKineticsDecoder.java
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<a href="#0b25e336fffd49716595e3506c44c5f69e74f340">
src/main/java/org/broad/igv/sam/reader/MergedAlignmentReader.java
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src/main/java/org/broad/igv/sam/smrt/SMRTKinetics.java
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src/main/java/org/broad/igv/sam/smrt/SMRTKineticsDecoder.java
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<a href="#a4cf9d2290bed9fe677b0e9b0962142bb8c6242c">
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src/main/java/org/broad/igv/sam/smrt/SMRTKineticsRenderer.java
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<li class="file-stats">
<a href="#d47cb7dc84e864de9e1fad984a3677d84bb617db">
src/main/java/org/broad/igv/sashimi/SashimiJunctionRenderer.java
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<li class="file-stats">
<a href="#f147d130997a4e74979b86c90c11daa9929d2036">
src/main/java/org/broad/igv/tools/converters/ExpressionFormatter.java
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<a href="#72a61c6229620a02ece5d2895063bf0114db994a">
src/main/java/org/broad/igv/track/AbstractTrack.java
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<a href="#c669a13af88b30b363061d40b4bc3a9ab3b73524">
src/main/java/org/broad/igv/ui/action/LoadFromURLMenuAction.java
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<a href="#42f287f4e04952efd70cb5ea12e1302ae3ac7a09">
src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
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<p style="font-size: small; color: #666;">
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