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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch upstream at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/toil/-/commit/acde40b066b5895cfd218223b1ea8706a2b36313">acde40b0</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2023-02-03T13:55:37+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 5.9.0</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
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<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<a href="#0f1f5be0a2e0d9a959a8c508d8813319a535bc93">
contrib/mypy-stubs/dill/_dill.pyi
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<a href="#1bb7dd9b86c17fdc59275faf0c2e42101a532ad8">
contrib/slurm-test/docker-compose.yml
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<a href="#f99c72d2aacbf31ded1872c66de3f988dced0301">
docs/appendices/environment_vars.rst
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<a href="#9b7b19eaf87ceb524470a920a457425b602cd816">
docs/developingWorkflows/toilAPIBatchsystem.rst
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<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">
docs/running/cliOptions.rst
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<a href="#8e4430ed91538c989bbba29d0f6541cce24a88d1">
docs/running/cloud/amazon.rst
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<a href="#70b5c097c4e102be40b0cbc3b0321bdec8cb6e10">
docs/running/cloud/kubernetes.rst
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<a href="#94ef85ac03a9b3926d1726c51aaf7e720200965d">
requirements-aws.txt
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<a href="#b1f2507748c66f157346e017893778f0bef7bab0">
requirements-cwl.txt
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<a href="#f4fb69164b97e1b6f17984369c9c382573a3f919">
requirements-dev.txt
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<a href="#6a514607084d67413c649e2effc9534b4e09ed88">
requirements-htcondor.txt
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<a href="#59062b9d0a92eb7800de569b9a6c8818efe8a415">
src/toil/batchSystems/abstractBatchSystem.py
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<a href="#ba9874937eb6ae181d36bbf4200e0990b9a14568">
src/toil/batchSystems/awsBatch.py
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<a href="#8665892a623b484a6317e6aef58200c3f489951b">
src/toil/batchSystems/gridengine.py
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<a href="#8354e49ab5525eaccab005722337809789a2b4c8">
src/toil/batchSystems/htcondor.py
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<a href="#9859689e8bd3ddc443a4adadad9053893501bd72">
src/toil/batchSystems/kubernetes.py
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<a href="#184892bb0e21972b1bc724ffc0b62a4c3616a44c">
src/toil/batchSystems/lsf.py
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<a href="#51c103b23323037f067bfea96a5cd293cbd8bfab">
src/toil/batchSystems/mesos/batchSystem.py
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<a href="#f186059ee2f5bb74d12be47bf27a34af0aa4daac">
src/toil/batchSystems/mesos/test/__init__.py
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<a href="#99c24d1b30534d665746feee900c46f6e8459b39">
src/toil/batchSystems/options.py
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<a href="#40d7e534600c41f2ac23866cd2edfb31bccd3afe">
src/toil/batchSystems/singleMachine.py
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<a href="#a6f3af15c881ae20fc1a43acbbeb46501aac42d1">
src/toil/batchSystems/slurm.py
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<a href="#f68dca19883bcb300c830aa0c46f4cbe0d79d533">
src/toil/batchSystems/tes.py
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<a href="#613fd687d50c98ed88dd86e84d2d6b01865013f3">
src/toil/batchSystems/torque.py
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<a href="#b5ab9a61b11b6e94229af5e4ca02bbd23c142a9d">
src/toil/bus.py
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<a href="#e4fd847d42e121b772337a96bada018b0e6ad45c">
src/toil/common.py
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<a href="#df27dbff3b966f43811f4070407a3035379463e4">
src/toil/cwl/__init__.py
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<li class="file-stats">
<a href="#0dbd18a5ef7b094b4ad2f95d5aa87ee2ed51212f">
src/toil/cwl/cwltoil.py
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The diff was not included because it is too large.
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