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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/toil/-/commit/acde40b066b5895cfd218223b1ea8706a2b36313">acde40b0</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-02-03T13:55:37+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>New upstream version 5.9.0</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/toil/-/commit/79b35ab223f5f38b81ee16a671cbe6bc62d9d838">79b35ab2</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-02-03T13:55:37+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/toil/-/commit/f913d15d63e3e61546800c033534950d0ecd57c6">f913d15d</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-02-03T13:55:44+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>Update upstream source from tag 'upstream/5.9.0'
Update to upstream version '5.9.0'
with Debian dir d830d6fb169fe4048deb2e91fbb5bc3cbfec7e99</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/toil/-/commit/acf205f34dfa54d9c089d7c900d27bc2fbb4c131">acf205f3</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-02-03T16:33:06+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>refresh patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/toil/-/commit/242d559396d3d1804c0bb3056c411b3565e649f9">242d5593</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-02-03T16:51:30+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>d/control: match build-deps to upstream
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/toil/-/commit/5b70d7394c609266ff079af3279622d4179a100d">5b70d739</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-02-03T18:48:35+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>run tests in parallel
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/toil/-/commit/8ba8fdfc0fe4798d18e9bdd8b64373103e27d659">8ba8fdfc</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-02-03T19:05:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.8125rem; color: #303030; position: relative; font-family: "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fafafa; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dbdbdb;'>routine-update: Ready to upload to unstable
</pre>
</li>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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.gitlab-ci.yml
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Makefile
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<a href="#0f1f5be0a2e0d9a959a8c508d8813319a535bc93">
contrib/mypy-stubs/dill/_dill.pyi
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<a href="#1bb7dd9b86c17fdc59275faf0c2e42101a532ad8">
contrib/slurm-test/docker-compose.yml
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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debian/control
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debian/patches/atomic_copy_as_alternative.patch
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debian/patches/exit_code_exception
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debian/patches/no_galaxy_lib
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debian/patches/setting_version.patch
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debian/rules
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debian/tests/control
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debian/tests/run-unit-tests
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docs/appendices/environment_vars.rst
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docs/developingWorkflows/toilAPIBatchsystem.rst
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docs/running/cliOptions.rst
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docs/running/cloud/amazon.rst
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docs/running/cloud/kubernetes.rst
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requirements-aws.txt
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requirements-cwl.txt
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requirements-dev.txt
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requirements-htcondor.txt
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src/toil/batchSystems/abstractBatchSystem.py
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src/toil/batchSystems/awsBatch.py
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src/toil/batchSystems/gridengine.py
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src/toil/batchSystems/htcondor.py
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src/toil/batchSystems/kubernetes.py
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src/toil/batchSystems/lsf.py
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src/toil/batchSystems/mesos/batchSystem.py
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src/toil/batchSystems/mesos/test/__init__.py
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The diff was not included because it is too large.
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