<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "Menlo"), DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/python-cogent">Debian Med / python-cogent</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/a3728cf2aa9b70105a3e10c48baa40927c9f0e7e">a3728cf2</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-22T07:50:11+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2023.2.12a1+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/8573209b73124a899f3f8adb97c828c557458a30">8573209b</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-22T07:50:11+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/690d9a3ed37754eedf4a8ba1885192bb688e79dd">690d9a3e</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-22T07:50:16+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2023.2.12a1+dfsg'

Update to upstream version '2023.2.12a1+dfsg'
with Debian dir e685bfe40f9119f0322647ffc7ff5e2f6a680e6c</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/800b7b037b2a80faf3b04005ad43cf3a472889c9">800b7b03</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-22T07:50:17+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/c0a8fffe7c1e2912504818f18bbd3267912fcc07">c0a8fffe</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-22T08:05:48+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/f3a74ae4457bcd6ff72843197c3e4ac478861aa4">f3a74ae4</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-02-22T08:16:14+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#37c182e857c9d9bb0eb6218a00392ab9f8e4d264">
<span class="new-file">
+
.github/workflows/codeql.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#6b9c6782d59be7c3d669b9e78328b8c384296d32">
.github/workflows/testing_develop.yml
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#fc1a47a75cc8dc593b20b5e840173df634b008a1">
.hgtags
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#4c23f3e77a0ef00cf8da63e8e50eef5197724f75">
changelog.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#a53b9729a10fb1d51cb010176e8bc05855db3113">
debian/patches/fix-build-on-single-cpu-systems.patch
</a>
</li>
<li class="file-stats">
<a href="#20ebd29097323b191d4559ebbbd71e142dc9f6a9">
doc/app/align-codon.rst
</a>
</li>
<li class="file-stats">
<a href="#31533a462d22a367b805a86b03fd8140ae1bbeb8">
doc/app/align-nucleotide.rst
</a>
</li>
<li class="file-stats">
<a href="#f44b149d8606cedb16e21482ca6562dc7bb3bfad">
doc/app/align-protein.rst
</a>
</li>
<li class="file-stats">
<a href="#c4a06db5ab88ffbbe3fd19177e07ba1ef7d350e6">
<span class="new-file">
+
doc/app/app-get.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#153baff751ac25d1f412e62dde97ebe1ef5e095d">
<span class="new-file">
+
doc/app/app-help.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#49e859ea9237ec65294eb4d7ca4a4f18274e0193">
doc/app/app-overview.rst
</a>
</li>
<li class="file-stats">
<a href="#ea13067b34bd42a24e5a7598637b60d3bc99f02b">
doc/app/available-apps.rst
</a>
</li>
<li class="file-stats">
<a href="#6b8723e73a35afa020ee1876c4b7606c027c0a9e">
doc/app/dstore.rst
</a>
</li>
<li class="file-stats">
<a href="#1547afe4324a9a746bbfb97fcb76b8ce51654f94">
doc/app/evo-ancestral-states.rst
</a>
</li>
<li class="file-stats">
<a href="#8df8933e4d6be02a43ce7ddae0c9003dff959a65">
doc/app/evo-dt-nuc-model.rst
</a>
</li>
<li class="file-stats">
<a href="#eb42d4510609a4c8b9fe45c266ceff85bbd675fc">
doc/app/evo-extract-model-stats.rst
</a>
</li>
<li class="file-stats">
<a href="#057043e519fc2fb948dad50c242927724f3a6b96">
doc/app/evo-hypothesis.rst
</a>
</li>
<li class="file-stats">
<a href="#43c6d9fbe91bc1c9d02cdfc4b17ecabce8c5369f">
doc/app/evo-model-timehet.rst
</a>
</li>
<li class="file-stats">
<a href="#dbe87dd0e0ccb02ab0acca79936a3cbc656a8d34">
doc/app/evo-model-with-tree.rst
</a>
</li>
<li class="file-stats">
<a href="#a4d585217bf1af1e49963757cd7aae7762b8fa82">
doc/app/evo-model.rst
</a>
</li>
<li class="file-stats">
<a href="#6cd869e94a72659bd24ebd63177d954321238023">
doc/app/evo-natsel_neutral.rst
</a>
</li>
<li class="file-stats">
<a href="#ace1589f229b7a6a0c60a5f2de2009ef2f09f864">
doc/app/evo-natsel_sitehet.rst
</a>
</li>
<li class="file-stats">
<a href="#c039a12b0237be770cb4f9ca58675b2783f2fd54">
doc/app/evo-natsel_timehet.rst
</a>
</li>
<li class="file-stats">
<a href="#a1c19caaa405b7cf09ff8529d24672127e1a5d17">
doc/app/evo-natsel_zhang.rst
</a>
</li>
<li class="file-stats">
<a href="#ae96eac80c345d1873b8be7baef3fe844d8190f3">
doc/app/evo-nstat-codon-model.rst
</a>
</li>
<li class="file-stats">
<a href="#e18ea3bbf78b2affd475b4d3d4bb2e14556850ab">
doc/app/evo-tr-codon-model.rst
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/python-cogent/-/compare/bd8cb61f8b24c52332c6be84ca525395b1389121...f3a74ae4457bcd6ff72843197c3e4ac478861aa4">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>



</p>
</div>
</body>
</html>