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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Tony Mancill pushed to branch master at <a href="https://salsa.debian.org/med-team/fastqc">Debian Med / fastqc</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqc/-/commit/fcb97980fbf0941f7a15b142baaa66f4a81313f0">fcb97980</a></strong>
<div>
<span> by tony mancill </span> <i> at 2023-03-09T06:59:54-08:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 0.12.1+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqc/-/commit/8ad8b3a646575e00ebd049f98889ee8a800d3e00">8ad8b3a6</a></strong>
<div>
<span> by tony mancill </span> <i> at 2023-03-09T06:59:54-08:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh patches for upstream 0.12.1
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqc/-/commit/c01907734215495944143085f234eafbfe3d19ca">c0190773</a></strong>
<div>
<span> by tony mancill </span> <i> at 2023-03-09T06:59:54-08:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Freshen years in debian/copyright
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqc/-/commit/5fd49e094a2efbb1f987fd6a58821ae60144f136">5fd49e09</a></strong>
<div>
<span> by tony mancill </span> <i> at 2023-03-09T06:59:54-08:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Bump Standards-Version to 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqc/-/commit/bd9d3ce2a6f13b5e690d18997e650392ce7fa6be">bd9d3ce2</a></strong>
<div>
<span> by tony mancill </span> <i> at 2023-03-09T06:59:54-08:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Prepare changelog for upload to experimental
</pre>
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</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#354079a72b91a4280407c16a36f47d1986fd85a5">
.classpath
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<li class="file-stats">
<a href="#20daadba341cde99e5297c17eb7e6e3d81c9530e">
Configuration/adapter_list.txt
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<li class="file-stats">
<a href="#1a6fd751175d16eadb0d4baf285b6d4b7b6c4040">
Help/3 Analysis Modules/10 Adapter Content.html
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<li class="file-stats">
<a href="#56fbd18b6e3c47a87ec03814ddd353023f44fb67">
Help/3 Analysis Modules/8 Duplicate Sequences.html
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<a href="#e91c772ad59fc95e29be01b4c68c87d57ef6d33e">
Help/3 Analysis Modules/9 Overrepresented Sequences.html
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<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
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<li class="file-stats">
<a href="#7218c513d6f727b5ea96fc048c04738db1285799">
RELEASE_NOTES.txt
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<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<a href="#0fc4ac37a9019632ae093b918bb615ac439ce57f">
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debian/patches/adapt_to_htslib.patch
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<li class="file-stats">
<a href="#90c380f647b7dccd37511cec4228c6cf9691967e">
debian/patches/build_xml.patch
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debian/patches/drop-fast5.patch
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</li>
<li class="file-stats">
<a href="#6cdda62e4cb4e251f8a5a29f663397632907d447">
debian/patches/fastqc.patch
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<a href="#63dea3c1b316e739942b6628858062aaf9272421">
<span class="deleted-file">
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debian/patches/htsjdk-api.patch
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debian/patches/java-9.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#3298ccc787ae057230815e840c980c07cee031f3">
fastqc
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<li class="file-stats">
<a href="#84fff692b48938cf047014dc655e47eccf9f4c11">
uk/ac/babraham/FastQC/Analysis/OfflineRunner.java
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<a href="#63103e172f7b922fdd9f68c54cbdc8effe198e87">
uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel.java
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<a href="#4abecb201fc238d51df86967669e9721b0b19f86">
uk/ac/babraham/FastQC/FastQCApplication.java
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<a href="#b0448286b8ff4e206450acdc6a0ca77ef6e21256">
uk/ac/babraham/FastQC/FastQCConfig.java
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<a href="#a0c3ececeba6f1d9f6b4807ab4c30678c221b041">
uk/ac/babraham/FastQC/FileFilters/BAMFileFilter.java
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<li class="file-stats">
<a href="#90d1cc794a341bb8d061ce0954b85d157115119d">
uk/ac/babraham/FastQC/FileFilters/FastQFileFilter.java
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<a href="#4e62f07c530c6233b07e78d413ac2346620fd090">
uk/ac/babraham/FastQC/FileFilters/MappedBAMFileFilter.java
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<a href="#e9f63f51554c886d766c4f8514ac17292120173c">
uk/ac/babraham/FastQC/Graphs/LineGraph.java
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<a href="#36e56ec4e3a5d4a3726b279f66d88aa48b42c7bf">
uk/ac/babraham/FastQC/Modules/AbstractQCModule.java
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<li class="file-stats">
<a href="#2f80f99e3f19d949f693ab40702d4730e21cd809">
uk/ac/babraham/FastQC/Modules/BasicStats.java
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<li class="file-stats">
<a href="#599886f55ff6b2afb619da338a48b076cd60db4b">
uk/ac/babraham/FastQC/Modules/DuplicationLevel.java
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
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<p style="font-size: small; color: #737278;">
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<a href="https://salsa.debian.org/med-team/fastqc/-/compare/b1ed505bd6509de37100cfd36c3cd1cbf1409154...bd9d3ce2a6f13b5e690d18997e650392ce7fa6be">View it on GitLab</a>.
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