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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Tony Mancill pushed to branch upstream at <a href="https://salsa.debian.org/med-team/fastqc">Debian Med / fastqc</a>
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Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/fastqc/-/commit/94a437027422ad19a3136f868d7f9ecfefa0325d">94a43702</a></strong>
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<span> by tony mancill </span> <i> at 2023-03-02T20:22:23-08:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 0.12.1+dfsg</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#354079a72b91a4280407c16a36f47d1986fd85a5">
.classpath
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<a href="#20daadba341cde99e5297c17eb7e6e3d81c9530e">
Configuration/adapter_list.txt
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<a href="#1a6fd751175d16eadb0d4baf285b6d4b7b6c4040">
Help/3 Analysis Modules/10 Adapter Content.html
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<a href="#56fbd18b6e3c47a87ec03814ddd353023f44fb67">
Help/3 Analysis Modules/8 Duplicate Sequences.html
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<a href="#e91c772ad59fc95e29be01b4c68c87d57ef6d33e">
Help/3 Analysis Modules/9 Overrepresented Sequences.html
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<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
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<a href="#7218c513d6f727b5ea96fc048c04738db1285799">
RELEASE_NOTES.txt
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<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
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<a href="#3298ccc787ae057230815e840c980c07cee031f3">
fastqc
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<a href="#84fff692b48938cf047014dc655e47eccf9f4c11">
uk/ac/babraham/FastQC/Analysis/OfflineRunner.java
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<a href="#63103e172f7b922fdd9f68c54cbdc8effe198e87">
uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel.java
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<a href="#4abecb201fc238d51df86967669e9721b0b19f86">
uk/ac/babraham/FastQC/FastQCApplication.java
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<a href="#b0448286b8ff4e206450acdc6a0ca77ef6e21256">
uk/ac/babraham/FastQC/FastQCConfig.java
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<a href="#a0c3ececeba6f1d9f6b4807ab4c30678c221b041">
uk/ac/babraham/FastQC/FileFilters/BAMFileFilter.java
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<a href="#90d1cc794a341bb8d061ce0954b85d157115119d">
uk/ac/babraham/FastQC/FileFilters/FastQFileFilter.java
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<a href="#4e62f07c530c6233b07e78d413ac2346620fd090">
uk/ac/babraham/FastQC/FileFilters/MappedBAMFileFilter.java
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<a href="#e9f63f51554c886d766c4f8514ac17292120173c">
uk/ac/babraham/FastQC/Graphs/LineGraph.java
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<a href="#36e56ec4e3a5d4a3726b279f66d88aa48b42c7bf">
uk/ac/babraham/FastQC/Modules/AbstractQCModule.java
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<a href="#2f80f99e3f19d949f693ab40702d4730e21cd809">
uk/ac/babraham/FastQC/Modules/BasicStats.java
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<a href="#599886f55ff6b2afb619da338a48b076cd60db4b">
uk/ac/babraham/FastQC/Modules/DuplicationLevel.java
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<a href="#ec553913ef8678876cd21e3127cbb87e623ea837">
uk/ac/babraham/FastQC/Modules/NContent.java
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<a href="#0bfe40c840b5355daf7d4fa57e195d52cf47e839">
uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs.java
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<a href="#ff73039d6f80221ab4399063f3ba9f2bc2a7017a">
uk/ac/babraham/FastQC/Modules/PerTileQualityScores.java
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<a href="#13fda75e9f5d8d977737bb540e3d241e848bcd5b">
uk/ac/babraham/FastQC/Report/HTMLReportArchive.java
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<a href="#ed73b3147fbbd35b0407c02b88481848c5c3a20e">
uk/ac/babraham/FastQC/Sequence/BAMFile.java
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<a href="#6b46ac4be4f8e4e6a8d505a58d493c44e24b854d">
uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminentFinder.java
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<a href="#44aa1f9b09948f3adb5c8553cedb012a3bd3d85e">
uk/ac/babraham/FastQC/Sequence/FastQFile.java
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<a href="#9526dac8df2b184a70c4a6c498ccf245a1745cce">
uk/ac/babraham/FastQC/Sequence/QualityEncoding/PhredEncoding.java
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<a href="#3c27a9cf9124938a5bfc628eb4926963a24162c0">
uk/ac/babraham/FastQC/Sequence/SequenceFactory.java
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<a href="#a7d35ebcf99b9ce4064cb8aaff56aa619498b469">
uk/ac/babraham/FastQC/Utilities/HotColdColourGradient.java
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The diff was not included because it is too large.
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