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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Alexandre Mestiashvili pushed to branch master at <a href="https://salsa.debian.org/med-team/subread">Debian Med / subread</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/subread/-/commit/6e40bf0f1d292e263cbbd55b72b4966f03a4e462">6e40bf0f</a></strong>
<div>
<span> by Alexandre Mestiashvili </span> <i> at 2023-03-11T12:46:13+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/copyright, remove .o files and prebuilt binary from src/longread-one
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/subread/-/commit/1a8f93e9a1b765f664a13936128f44c4a8a57d24">1a8f93e9</a></strong>
<div>
<span> by Alexandre Mestiashvili </span> <i> at 2023-03-11T12:46:46+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.0.4+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/subread/-/commit/175e9fe4f23138348a909f64ef13984cdd6993f2">175e9fe4</a></strong>
<div>
<span> by Alexandre Mestiashvili </span> <i> at 2023-03-11T12:47:35+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.0.4+dfsg'
Update to upstream version '2.0.4+dfsg'
with Debian dir 418ab6b282939b8f2254ca55f6d5ce3e0341b44d</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/subread/-/commit/7787ecc176da31aad198a6767a3e2676815f9c4a">7787ecc1</a></strong>
<div>
<span> by Alexandre Mestiashvili </span> <i> at 2023-03-11T12:47:51+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches, update and refresh
Incorporare cross patch into arch_specific_flags.patch
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/subread/-/commit/dd6cd9449fe19a276182b7dc92bfb337d1aff00f">dd6cd944</a></strong>
<div>
<span> by Alexandre Mestiashvili </span> <i> at 2023-03-11T12:48:23+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/*.1, generate manpages
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/subread/-/commit/c496fae2d94ed9b9319fe899300b1a142f4ea38b">c496fae2</a></strong>
<div>
<span> by Alexandre Mestiashvili </span> <i> at 2023-03-11T12:48:40+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>remove unused d/filter.pl
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/subread/-/commit/c0ce659c04099ca3b25086a9392d458129cebc77">c0ce659c</a></strong>
<div>
<span> by Alexandre Mestiashvili </span> <i> at 2023-03-11T12:49:01+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control, bump debhelper-compat and policy versions
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/subread/-/commit/8d8c4601c9c541c83e07be5f3e18041e7c3c5a8a">8d8c4601</a></strong>
<div>
<span> by Alexandre Mestiashvili </span> <i> at 2023-03-11T12:59:51+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update d/changelog
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#19408922082cf16882a0f542094cf5545bf10f74">
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+
annotation/mm39_RefSeq_exon.txt.gz
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</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#51a16788dfdbabf7ab3f01368522680969274f47">
debian/exactSNP.1
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</li>
<li class="file-stats">
<a href="#dbfc8fe9aa8cecc88dc4e2ad94876a25f9c32b13">
debian/featureCounts.1
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<li class="file-stats">
<a href="#a79a25c442bd06dd79c2e917f5637fe81069168b">
<span class="deleted-file">
−
debian/filter.pl
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</li>
<li class="file-stats">
<a href="#eca26d949db3633f7a2159cdb0c6e4754e181fc0">
debian/flattenGTF.1
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<li class="file-stats">
<a href="#7dd929a53e161c5508fa6a66bc1216a601b368e0">
debian/genRandomReads.1
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<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
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<li class="file-stats">
<a href="#e5dd98c113be2752e1d0ece7dd39cb253d83216c">
debian/patches/arch_specific_flags.patch
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<li class="file-stats">
<a href="#fb9e8d937d72f3a26397728040ed9ba05f3aea89">
debian/patches/fix_ftbfs_kfreebsd.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#738bfe9eb140bee362e519ae990e19d7391f9b5f">
debian/patches/typo.patch
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<li class="file-stats">
<a href="#d72909591deaaba3067a92dea9931f85160443a5">
debian/propmapped.1
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<a href="#067eda500d5b35e6f03d5d8301a356f7b28d6b37">
debian/qualityScores.1
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<li class="file-stats">
<a href="#a3cf762be29d2617e2a49b719257449a82bc2173">
debian/removeDup.1
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<a href="#2ab12e3e918d4124ed4e4721dceeb8e391fcceae">
debian/repair.1
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<a href="#5a9dd7e3368c6a37f1b22926c3e5be9c0aa1e8af">
debian/subindel.1
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<a href="#9319d99ca554b71ca11a5ae7df1a328b9a8855db">
debian/subjunc.1
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<a href="#8950361b324a5ce7cac6dd7d247868b9a5712ddd">
debian/sublong.1
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<a href="#1acbcc022307cd150346cd71305d3596cd781c9b">
debian/subread-align.1
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<li class="file-stats">
<a href="#1f52ac2cf45ecea1314b5641f118993be24ec294">
debian/subread-buildindex.1
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<a href="#019765570ca3eb0e553fab67072792f5c6e5d13a">
debian/subread-fullscan.1
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<li class="file-stats">
<a href="#9b9715372d0cd39d21711a077b6f2ae42fb45135">
doc/SubreadUsersGuide.tex
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<a href="#7079f81404dcaadc0154c53a419b2d1cb5f253e6">
src/HelperFunctions.c
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<a href="#e8151656777acee64e1f016170e308d49d0a7f96">
src/HelperFunctions.h
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<a href="#c1b8d333291fcba8482e6874c5a8cf61b565242c">
src/Makefile.Linux
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<li class="file-stats">
<a href="#296b4814ae931def4e82a8f84e22f6c24f5b3b14">
src/core-indel.c
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<li class="file-stats">
<a href="#269c5079f32c711431ad058d1e3ac63987f29255">
src/core-indel.h
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The diff was not included because it is too large.
</h5>
</div>
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