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Nilesh Patra pushed to branch master at <a href="https://salsa.debian.org/med-team/lamassemble">Debian Med / lamassemble</a>
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Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/lamassemble/-/commit/c27aad26a1c46bcff6eb1fd5193fa0538b01e587">c27aad26</a></strong>
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<span> by Nilesh Patra </span> <i> at 2023-05-09T00:57:24+05:30 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update testdata
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4 changed files:
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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debian/tests/data/group25-aln.fa
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debian/tests/data/lama-tests.out
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debian/tests/data/lama-tests.sh
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Changes:
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<a href="https://salsa.debian.org/med-team/lamassemble/-/commit/c27aad26a1c46bcff6eb1fd5193fa0538b01e587#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong style="font-weight: bold;">debian/changelog</strong></a>
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<td class="line_content match" style="color: rgba(31,30,36,0.24); padding: inherit;" bgcolor="#fbfafd">@@ -2,8 +2,9 @@ lamassemble (1.6.0-1) UNRELEASED; urgency=medium</td>
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2
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="old_line diff-line-num" data-linenumber="3" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
3
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<td class="new_line diff-line-num" data-linenumber="3" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
3
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC3" class="line" lang="plaintext"> * New upstream version 1.6.0</span>
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4
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<td class="new_line diff-line-num" data-linenumber="4" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC4" class="line" lang="plaintext"> * Bump Standards-Version to 4.6.2 (no changes needed)</span>
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<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC5" class="line" lang="plaintext"> * Update testdata</span>
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC6" class="line" lang="plaintext"></span>
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<td class="old_line diff-line-num old" data-linenumber="6" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="new_line diff-line-num old" data-linenumber="7" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC6" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Tue, 09 May 2023 00:<span class="idiff left deletion" style="background-color: #fac5cd;">3</span>5:5<span class="idiff right deletion" style="background-color: #fac5cd;">5</span> +0530</span>
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<td class="new_line diff-line-num new" data-linenumber="7" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
7
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Tue, 09 May 2023 00:5<span class="idiff left addition" style="background-color: #c7f0d2;">6</span>:5<span class="idiff right addition" style="background-color: #c7f0d2;">9</span> +0530</span>
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC8" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC9" class="line" lang="plaintext">lamassemble (1.4.2-5) unstable; urgency=medium</span>
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<a href="https://salsa.debian.org/med-team/lamassemble/-/commit/c27aad26a1c46bcff6eb1fd5193fa0538b01e587#796a9ac8a1a82e3d2b3a30d40bc32b98480bc5af"><strong style="font-weight: bold;">debian/tests/data/group25-aln.fa</strong></a>
The diff for this file was not included because it is too large.
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<a href="https://salsa.debian.org/med-team/lamassemble/-/commit/c27aad26a1c46bcff6eb1fd5193fa0538b01e587#6041d94e5b3c9764c6a159157567b835997e7b4e"><strong style="font-weight: bold;">debian/tests/data/lama-tests.out</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
<td class="line_content match" style="color: rgba(31,30,36,0.24); padding: inherit;" bgcolor="#fbfafd">@@ -6,6 +6,7 @@ Options:</td>
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<td class="new_line diff-line-num" data-linenumber="6" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC6" class="line" lang=""> -h, --help show this help message and exit</span>
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<td class="old_line diff-line-num" data-linenumber="7" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="new_line diff-line-num" data-linenumber="7" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC7" class="line" lang=""> -a, --alignment print an alignment, not a consensus</span>
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<td class="new_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC8" class="line" lang=""> -c, --consensus just make a consensus, of already-aligned sequences</span>
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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC9" class="line" lang=""> -f FMT, --format=FMT output format: fasta/fa or fastq/fq (default=fasta)</span>
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9
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<td class="new_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
10
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC10" class="line" lang=""> -g G, --gap-max=G use alignment columns with <= G% gaps (default=50)</span>
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10
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<td class="new_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
11
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC11" class="line" lang=""> --end ... including gaps past the ends of the sequences</span>
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<td class="old_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
11
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<td class="new_line diff-line-num" data-linenumber="12" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
12
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC12" class="line" lang=""> -s S, --seq-min=S omit consensus flanks with < S sequences (default=1)</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7116" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7117" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
<td class="line_content match" style="color: rgba(31,30,36,0.24); padding: inherit;" bgcolor="#fbfafd">@@ -7116,3 +7117,11 @@ ctcatgtttttagatctgtccatagccgtaatctccagaatttagatgtcaagagactcagattaaggccaaacctttta</td>
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7116
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<td class="new_line diff-line-num" data-linenumber="7117" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
7117
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC7117" class="line" lang="">tccctcagtgaatggtggataggcattgatataaataatgaatattattcagttcaggagattattttactagaataaatttaggacattgtaatgaataaccaaaggacagacctgtttgaccagttaataaaatatctaatagttaaactctagaacagaaagaatagatcagtggtagtgaaataaaagttgttgtttcataggttgaatttagtttatataaaatcatttagcgatgttatagcaataatatatttaatattatttaactatgttaatatatttagatggtacatttagtttagtattaaaatgattctaaagaatacatttataaccttttcaaatactcaatcataaaatgtcaaaacataagggccagtgcagtggtcatccgtaataaatacagaggctgaggatggagataggaaaagttgaccagcctggcaacataatagaccatctacaaatcacaagcaagaaactggcaaattaaaatatgtgagacttaacagcagactcttggctcaaaatttaatattattaaggtcaatactacagcacaattagtattttcatcaaaacccaatgttacgtttttagaaatatttgtcctaattctagaatatcaggacaatgagtagccaaagactttagagaacgaagttgaggtgtcacattctgatttcaacaattacaaatataaatacaaccagaaagacaaatagatgatggaacgaatagagccagatatagaccatcatgaatatcatcagataatcttcaaacaagttgccattacaaacaacagaataacagaccctttaacaaatagtgttctaaagtgaacatcaaaatggaaatgaaattgacttctgacttgaaccatatacaaaatatcttaaataaattaaacaaatgtaagtagatagctataaactcttaaatatgaggtaaaatcatgacatttgtcttggtaattttaaatatgacattaaaagcaagtaacaagaaaaagcagaaaatggactactcaaatagtagctgacataaaacatttaatgtcacgtaaatgaaaaattacaaatgatatatttgatagaagttaataaccagatgtataacaacttaaactcaaaaactgaacaaccctatttaaaatgggcaaatctcaacagatgtttcacaaagagatatacaatggcaagaggaatttgaaaggatggtcaaattcacgaacttagaaatgagcaaaatcccaatgatattactacaccattagatggccactatcaaacgagaaaataataaatattttcaaggatgtagataaattgatatacttgtcactgagtggtggaaaatataatgcagccattatgaaaatagtacagagttcctagatattaaaatggaattattgtactatcttgttgagtcaaagaatgagtgttgtgaccaactcattataccactgaggctatatgagcaaacagcaaactgttctcatgaatgaggatgttgcgctgacaactgcatctgcaaccagaaggaatgctgagggcagtcatgccccggcacagtgtttcttgtggttatctatagaacatctggacctgttgtacaaagaaaccaattatgtgagcctgtgataaatcaggcgctgactaacattatcttctcctgttgattctacctaatgaatacaaggctgtataagctcaggcccttgttcctaaaaagagccctgacccttctttaaaacagatctttgtcttgtcttcatttctgcgttgtctcttcttcagtcctgaacgacagccaagtggcacctgaacaggacttgaacaagaaaggtctgtgagcagtgaaactgaccagatgaatagaaaccctgatgagtctgcctgcaggatataaggtcagtgtctaagaggtactggagtggaagtttgaatcaggtaacgtggggcgagtttgtctgttgagagcagcattaatgcagttgcttaaagttttacgaaacaatctgatgctcaggttagttctcaacgctgatgctgctgcaggggttatcatgcataaccctcgtttcgtagacaggcgcttgatgtggaaaattgaactggtaggaaggattaaatgggctcatcaaaaggtcttaagtttatccttcctttttctgtttgagtttagtcatactgtctcctgccattatctcattcttattctgccaaccgcaggagccatgttctgaatctcaaatttgaaagaatcttttgtcccaccacaacacccaagaaaataataaacaggaggaggatgaaaattgcatctcacctcagtagcagaaacacctgtccatctccttcagtaacagaaatagagaccccactgcaaaattatgtctgctaccatagctggagagcccttagacattgcactttcactatttctgtaggcctgatcaaataatccacagcagtttatttatgaacatgcctcactagagttttgttgaaggaattaaaagctagtgtagtgaataatggagtacagagcccatttactttaggattgttagaatctgtattttgaactatgtcttccatccttgatgtaaagcatttggctcacacttgtttgtctgctagtgcatatctgaaatggaatttaaattggcaagaactgtgtgcacaccaggctagacaaattgtgccggacacagggacattacagaggatatgctgttggcatggccttattcagacctgaatatcaaatgacactcccagacgctgctataagcagcgcactggctgctaaatgcactagacacaattcagaggaaggtccaatacaacttttacatgcatgcaagggtcaaaggagcactatgcacatttctgcatgattacaagaggcagtgaggcatcagattcccataccactgctgcagaaatgctaaccttaactttagctttgagaatgcaacacggattataaatgtcactggctcctgtgagatgtactaaaacttagacattttctcaaacttgtcaagatgtgagaactgagctcattgctctacaatgttagctcaagcaatggctaatttagtagttaacaaatctaaaagggctaagggtcaaacctaaatgggaaaatcttataattgtggaaaatcgacatttcaaaggaatgccatcagaccttgggcaaagggatcttataatgcaatacccctcagcagaaaattcagaaatttgcccttgttgcaataaagaaatcattgactaatcaatgcagttcaaaatttcatcagaatggcactctgtcgggaaccagaaggagcctgacggtcccctcaaacaatgggcatttcctgtcaggccacaaccccatttcaggaggagtctatggaggaacattgattccctttcccaggaacaccagaagcacaggaatagatctctgtcagaatgggttacattagttggagaaacaaacccactaaaattccactggtatttggagaccttgccaacaggatatatgggattaatttggtaaatccatctcaactacaggacattactgtagtcccagagttgttgactgtgattatgaaggagaaattcaagtagtggtaatatcacaagatttgttagttttgaacctggagaatatgtaactcaactactgcttattcctggagttgtttcttctccacataaggagaaatgagagaatcaaggtttgggagtacagctaggaggaaaatttatttatcacaaccatagcatctaatagacccacctgtacagtgcaaattaaaggaaaaatttcatgggcttatggatatggagtgatgtcagtaatatctaaaaacaattggccccatcctggccctgcaattaactcctacatcgctagtggaatagaacagctcaaagtgttcaacagagtgctgaaattttacctgtctcaaaccagatggacagtcatgtactttaaatttattttgcaaatgtaactgttaacctatggggccaagatttacttacagcatgggatataagacttgcaatgaaactattgacaatcaggttcaaaatgttaaagaaaatgggatgtcaggcgaaaaggcttagaaaagtccctacaggaaacactgatcctatatcaatagctgggcaaacagatagaaagggctaggtcatcaaatttctgatgggagtcactgatattctcccatctactgttttaccgctggagtggttgacaaaaacctgtatgggtggatcagtggctatcacaggagaaataacacatccatcagctagtaaagacaaatggatgcaggacatattgaagagtcagttagcacctggaattcatcagtatttgtaattcctaaaagtcaggaaaatgatgactgctacatgatttgagagctattaatgcacattaaaccaatgggtgcattacagcaagtctgccatccccggcagcctttcaggaggctggcctctcaagtaatatatcttaaagattttatttatttttattttactgttacatgagcaggataagcatcgatttgcctttagtgctctgttaatcaaagagcctgtctcattatcaatggaaagtctaccccaaggcatgttaacagcattatatcagcatgttgtaggataggcattaaggtgctctgaatatgtttccacagcctacatccgtcattatatggatgatattcttctgccctcctacagatcaaatttatatcagttattcagataaataaaatgagctttgacttaaatggaatctcaaaatagctccagaaaaggtgcaaacaacctctgataccagtactaggcactattgttactgaaagaagtgtttggcctcagagtagtcctccataggacagattacaaacttgaatgatttcaaaattattagggacattaactggct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<td class="old_line diff-line-num" data-linenumber="7117" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
7117
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<td class="new_line diff-line-num" data-linenumber="7118" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
7118
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC7118" class="line" lang="">>lamassembled</span>
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<td class="old_line diff-line-num" data-linenumber="7118" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
7118
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<td class="new_line diff-line-num" data-linenumber="7119" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
7119
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC7119" class="line" 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ataaatacgtgcgaggttccccaagagggcccttgcctggagtagtgtccacgacacccaggcctcttgtggagcatctcttcaacacagcgcctctccagagagatgggctggccctcccaggaccagcagcccagttccagaagcccatgggtcatcaccaacctcatctggctaggcgtgtccctgaggctacggcaccatcatgcagggatttccacggaacccagggccgtaggctgctgctctggggccccaggggatcaagggtctggccagcctgtctctggctcaagacacatgcctgggggtggggtttctcctcgctcatagcatcgcctgggtaaaccaacagttaccgctcccgcagcgactcaacattcacatccatgaaaaaggcacccgtgtagggtgacctttccaggaagcc</span>
</pre></td>
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<td class="old_line diff-line-num new" data-linenumber="7119" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
</td>
<td class="new_line diff-line-num new" data-linenumber="7120" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
7120
</td>
<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7120" class="line" lang="">>lamassembled</span>
</pre></td>
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<tr class="line_holder new" style="line-height: 1.6;">
<td class="old_line diff-line-num new" data-linenumber="7119" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="7121" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
7121
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7121" class="line" 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taaatacgtgcgaggttccccaagagggcccttgcctggagtagtgtccacgacacccaggcctcttgtggagcatctcttcaacacagcgcctctccagagagatgggctggccctcccaggaccagcagcccagttccagaagcccatgggtcatcaccaacctcatctggctaggcgtgtccctgaggctacggcaccatcatgcagggatttccacggaacccagggccgtaggctgctgctctggggccccaggggatcaagggtctggccagcctgtctctggctcaagacacatgcctgggggtggggtttctcctcgctcatagcatcgcctgggtaaaccaacagttaccgctcccgcagcgactcaacattcacatccatgaaaaaggcacccgtgtagggtgacctttccaggaagcc</span>
</pre></td>
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<td class="old_line diff-line-num new" data-linenumber="7119" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
</td>
<td class="new_line diff-line-num new" data-linenumber="7122" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
7122
</td>
<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7122" class="line" lang="">@lamassembled</span>
</pre></td>
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<td class="old_line diff-line-num new" data-linenumber="7119" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="7123" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
7123
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7123" class="line" 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taaatacgtgcgaggttccccaagagggcccttgcctggagtagtgtccacgacacccaggcctcttgtggagcatctcttcaacacagcgcctctccagagagatgggctggccctcccaggaccagcagcccagttccagaagcccatgggtcatcaccaacctcatctggctaggcgtgtccctgaggctacggcaccatcatgcagggatttccacggaacccagggccgtaggctgctgctctggggccccaggggatcaagggtctggccagcctgtctctggctcaagacacatgcctgggggtggggtttctcctcgctcatagcatcgcctgggtaaaccaacagttaccgctcccgcagcgactcaacattcacatccatgaaaaaggcacccgtgtagggtgacctttccaggaagcc</span>
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<td class="old_line diff-line-num new" data-linenumber="7119" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="7124" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
7124
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7124" class="line" lang="">+</span>
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<td class="old_line diff-line-num new" data-linenumber="7119" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="7125" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7125" class="line" 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</pre></td>
</tr>
<tr class="line_holder new" style="line-height: 1.6;">
<td class="old_line diff-line-num new" data-linenumber="7119" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
</td>
<td class="new_line diff-line-num new" data-linenumber="7126" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
7126
</td>
<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7126" class="line" lang="">>lamassembled</span>
</pre></td>
</tr>
<tr class="line_holder new" style="line-height: 1.6;">
<td class="old_line diff-line-num new" data-linenumber="7119" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
</td>
<td class="new_line diff-line-num new" data-linenumber="7127" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
7127
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7127" class="line" 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acaatacgtgcgaggttccccaagagggcccttgcctggagtagtgtccacgacacccaggcctcttgtggagcatctcttcaacacagcgcctctccagagagatgggctggccctcccaggaccagcagcccagttccagaagcccatgggtcatcaccaacctcatctggctaggcgtgtccctgaggctacggcaccatcatgcaggagtttccacggaacccagggccgtaggctgctgctctggggccccaggggatcaagggtctggccagcctgtctctggctcaagacacatgcctgggggtggggtttctcctcgctcatagcatcgcctgggtaaaccaacagttaccgctcccgcagcgactcaacattcacatccatgaaaaaggcacccgtgtagggtgacctttccaggaagcc</span>
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<li id="72de6c35b6602886b48be66b789176993267cea9">
<a href="https://salsa.debian.org/med-team/lamassemble/-/commit/c27aad26a1c46bcff6eb1fd5193fa0538b01e587#72de6c35b6602886b48be66b789176993267cea9"><strong style="font-weight: bold;">debian/tests/data/lama-tests.sh</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
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<td class="old_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
18
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<td class="new_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
18
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC18" class="line" lang="shell"> lamassemble <span class="nt" style="color: #000080;">-z10</span> <span class="nt" style="color: #000080;">-d100</span> <span class="nv" style="color: #008080;">$mat</span> <span class="nv" style="color: #008080;">$fa</span></span>
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<td class="old_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
19
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<td class="new_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
19
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC19" class="line" lang="shell"> lamassemble <span class="nt" style="color: #000080;">--end</span> <span class="nt" style="color: #000080;">-z20</span> <span class="nv" style="color: #008080;">$mat</span> <span class="nv" style="color: #008080;">$fa</span></span>
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<td class="old_line diff-line-num" data-linenumber="20" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
20
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<td class="new_line diff-line-num" data-linenumber="20" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
20
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC20" class="line" lang="shell"> lamassemble <span class="nt" style="color: #000080;">-s2</span> <span class="nt" style="color: #000080;">-z20</span> <span class="nv" style="color: #008080;">$mat</span> <span class="nv" style="color: #008080;">$fa</span></span>
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<td class="old_line diff-line-num old" data-linenumber="21" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
21
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<td class="new_line diff-line-num old" data-linenumber="21" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC21" class="line" lang="shell"><span class="o" style="font-weight: 600;">}</span> 2>&1 |</span>
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<td class="old_line diff-line-num old" data-linenumber="22" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
22
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<td class="new_line diff-line-num old" data-linenumber="21" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC22" class="line" lang="shell"> diff <span class="nt" style="color: #000080;">-u</span> lama-tests.out -</span></pre></td>
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<td class="old_line diff-line-num new" data-linenumber="23" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="21" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
21
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC21" class="line" lang="shell"> lamassemble <span class="nt" style="color: #000080;">-c</span> <span class="nv" style="color: #008080;">$mat</span> group25-aln.fa</span>
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<td class="old_line diff-line-num new" data-linenumber="23" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="22" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
22
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC22" class="line" lang="shell"> lamassemble <span class="nt" style="color: #000080;">-c</span> <span class="nt" style="color: #000080;">-fFASTQ</span> <span class="nv" style="color: #008080;">$mat</span> group25-aln.fa</span>
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<td class="old_line diff-line-num new" data-linenumber="23" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="23" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
23
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC23" class="line" lang="shell"> lamassemble PromethION-2019 <span class="nv" style="color: #008080;">$fa</span></span>
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<td class="old_line diff-line-num new" data-linenumber="23" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="24" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
24
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC24" class="line" lang="shell"><span class="o" style="font-weight: 600;">}</span> 2>&1 | diff <span class="nt" style="color: #000080;">-u</span> lama-tests.out -</span></pre></td>
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