<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "Menlo"), DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Nilesh Patra pushed to branch master at <a href="https://salsa.debian.org/med-team/hyphy">Debian Med / hyphy</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/hyphy/-/commit/6bfe108ef2f80294a1d311e4878296031b5a5f11">6bfe108e</a></strong>
<div>
<span> by Nilesh Patra </span> <i> at 2023-05-09T22:21:01+05:30 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.5.50+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/hyphy/-/commit/f505b1d0de2cc772ac399d55f10704dd6633ebe8">f505b1d0</a></strong>
<div>
<span> by Nilesh Patra </span> <i> at 2023-05-09T22:21:01+05:30 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/hyphy/-/commit/0dc20b5bf2146c8e5116cc59263c335483c2c15c">0dc20b5b</a></strong>
<div>
<span> by Nilesh Patra </span> <i> at 2023-05-09T22:29:03+05:30 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Interim d/ch
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#2988cbe972fe24aeb6ee4536af0d0adb14495729">
<span class="deleted-file">
−
.github/workflows/benchmark.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#37c182e857c9d9bb0eb6218a00392ab9f8e4d264">
<span class="deleted-file">
−
.github/workflows/codeql.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#e5a6f1ed046081016d3663d7c080e9a742d096d0">
<span class="deleted-file">
−
.github/workflows/coverage.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#1d19aad7b7b27d190877325ddc2bf187f2ea4808">
<span class="deleted-file">
−
.github/workflows/stale.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="deleted-file">
−
.travis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#63c3307a25f0c1334b59e145f9fc809c05bbfa70">
debian/patches/rm_arch_specific_flags.patch
</a>
</li>
<li class="file-stats">
<a href="#fae4045e7c53be7e233f4d504a872eab7bffa150">
debian/patches/set-zlib-after-setting-default-libs.patch
</a>
</li>
<li class="file-stats">
<a href="#d185b62d54557160e7ddc743405a9cec66dcaa96">
debian/patches/use_debian_sqlite.patch
</a>
</li>
<li class="file-stats">
<a href="#1fdf1a1dd435e31170c3db4d153f0c2f92c88581">
res/TemplateBatchFiles/MSS-selector-2.bf
</a>
</li>
<li class="file-stats">
<a href="#0471440a9c90a004e27c37511b1f80d0cba41012">
res/TemplateBatchFiles/MSS-selector.bf
</a>
</li>
<li class="file-stats">
<a href="#80cb7c212661a2afbd05c16dce9f84f45709578e">
res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
</a>
</li>
<li class="file-stats">
<a href="#c079be28c5231888d711d5c41d1be180223dfce6">
res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
</a>
</li>
<li class="file-stats">
<a href="#65ee9d47988109d0925fe3692b68b7b246e7fc1d">
res/TemplateBatchFiles/libv3/IOFunctions.bf
</a>
</li>
<li class="file-stats">
<a href="#c50a9ebb34fca832759d3d11698588f8851c99cb">
res/TemplateBatchFiles/libv3/UtilityFunctions.bf
</a>
</li>
<li class="file-stats">
<a href="#5dfec713e3892a936e8b5a63db56c03bee3ec252">
res/TemplateBatchFiles/libv3/all-terms.bf
</a>
</li>
<li class="file-stats">
<a href="#801d4bca405dfccac3b1e451b211ca98bd00d599">
res/TemplateBatchFiles/libv3/models/parameters.bf
</a>
</li>
<li class="file-stats">
<a href="#a814a8f68cb26d458d0347113b00f184c37a1e1d">
res/TemplateBatchFiles/libv3/models/rate_variation.bf
</a>
</li>
<li class="file-stats">
<a href="#e7b72a8f9f424fe1e9e9e76f25522816189c14c9">
res/TemplateBatchFiles/libv3/tasks/alignments.bf
</a>
</li>
<li class="file-stats">
<a href="#c7933e171033f4eac9d83419583cca5474f9266c">
res/TemplateBatchFiles/libv3/tasks/estimators.bf
</a>
</li>
<li class="file-stats">
<a href="#3945e6db8feb0e4ed58719b69ff3d8485bc45e87">
res/TemplateBatchFiles/libv3/tasks/trees.bf
</a>
</li>
<li class="file-stats">
<a href="#9a5ae795d85e4d5f1568726c609e2499546cd590">
src/core/associative_list.cpp
</a>
</li>
<li class="file-stats">
<a href="#2ce7329619b2284ff339ae9f79f84aabfca44b9e">
src/core/avllistx.cpp
</a>
</li>
<li class="file-stats">
<a href="#02cbcb76e8ce1aa3e72d55e6696cda20813d57b6">
src/core/batchlan.cpp
</a>
</li>
<li class="file-stats">
<a href="#cbedcf5fec686e5f563504b995c5d7d07fd8c6b2">
src/core/batchlanruntime.cpp
</a>
</li>
<li class="file-stats">
<a href="#510613b42c8a7654f32b2e5cf38d6a8a88fad772">
src/core/calcnode.cpp
</a>
</li>
<li class="file-stats">
<a href="#8f267f0287b6f2dfc1594ce4cfeb588fe8a2578c">
src/core/category.cpp
</a>
</li>
<li class="file-stats">
<a href="#7474aa77ff4fbb7ca8b12091ad6d5e459fdc18c6">
src/core/dataset.cpp
</a>
</li>
<li class="file-stats">
<a href="#07aceb8d215a75908cea626d9c80bc2a7c06639c">
src/core/global_things.cpp
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">
—
<br>
<a href="https://salsa.debian.org/med-team/hyphy/-/compare/25524073cecb9741138300f860cb0f0499cd449a...0dc20b5bf2146c8e5116cc59263c335483c2c15c">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
</p>
</div>
</body>
</html>