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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/htslib">Debian Med / htslib</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/da0e225f06cb9e63f92d9230340b28f56a4a1c1b">da0e225f</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:15:39+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/edcf7093abe494dffaa8a3ee5b77c43415097711">edcf7093</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:15:40+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.17+ds</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/a74b7d952f5e42bb2a7b463e13dbd88b03c03cd5">a74b7d95</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:15:42+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.17+ds'
Update to upstream version '1.17+ds'
with Debian dir f3057c68b5a6cdf4da4a716d162ba9fbf554fcae</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/5c299fc86b80a4e7d4e5551c9c4661dff9dae0c5">5c299fc8</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:15:42+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/964596f24b1c8d7cc475f660b03b36055899c10f">964596f2</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:18:47+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: fix indentation in build dependencies
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/ce6682561c988ac8d0c02edf414127f7f34492f5">ce668256</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:19:24+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: clear fields with obsolete packages
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/f78af997f652e015200b82d8231a4f70d5b4e9ea">f78af997</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:19:48+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>no_git_version patch: forwarding not-needed
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/f8d94e583190bb17d53abb2d811fd0b87e6c9564">f8d94e58</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:24:56+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fPIC.patch: unfuzz
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/85982375e2f85dd86358547714e482a1efc07db4">85982375</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:25:28+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>cram_to_bam_export.patch: unfuzz
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/760426bc0355c8b4ee9ab11fa3827355d23401aa">760426bc</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:25:45+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fix_sequence_of_linked_libs.patch: unfuzz
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/39e64da4f5f39ff31a1c9f5903cbfc128f846585">39e64da4</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:33:22+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>trim-file-prefix.patch: refresh
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/2bd712a9c86fa7f217a84d612a6365cacd87b028">2bd712a9</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-11T15:41:13+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>update changelog (with TODO item)
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#c335a27a082cc8d17dd36dc0eda3086cb0c9baaa">
INSTALL
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#784f84af063299f7e2f0676f161fe91f67f77ab0">
bgzf.c
</a>
</li>
<li class="file-stats">
<a href="#6a0642ef327a4ce0d9e388d0b0cf0a71638ad61b">
bgzip.1
</a>
</li>
<li class="file-stats">
<a href="#5422e2382dc57b288f3056d5cd31f46ca4fd2069">
bgzip.c
</a>
</li>
<li class="file-stats">
<a href="#47fc0e419d965659228637bfdaa95e1e9735cad0">
config.mk.in
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#f8b76cf0449491c257e26413ecc0d1c585aac7aa">
<span class="new-file">
+
cram/README
</span>
</a>
</li>
<li class="file-stats">
<a href="#5c8ade8ae11dfe042170aa961699bbd02f2ec97e">
cram/cram_codecs.c
</a>
</li>
<li class="file-stats">
<a href="#d44bcf887890b26ebada40c205e8504015e2f6d2">
cram/cram_codecs.h
</a>
</li>
<li class="file-stats">
<a href="#840976018c922d6811354c31daaa780aa6f261bf">
cram/cram_decode.c
</a>
</li>
<li class="file-stats">
<a href="#8966c85872f8c44558af7fb66d11572221b10d6f">
cram/cram_encode.c
</a>
</li>
<li class="file-stats">
<a href="#ce757aebbb1a9c04c097f4250c7869907b11860b">
cram/cram_external.c
</a>
</li>
<li class="file-stats">
<a href="#5f323d0f8e1572d29ce69422114ea3c683c08bd6">
cram/cram_io.c
</a>
</li>
<li class="file-stats">
<a href="#c2e58e744743fb847b78a46d902e0ca3cb766961">
cram/cram_structs.h
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#08203429b53d7fa2f4760940c31cbde4eb76e64b">
debian/patches/cram_to_bam_export.patch
</a>
</li>
<li class="file-stats">
<a href="#9aa2c7e0becab0a54af7d952db76b2d88da8b72a">
debian/patches/fPIC.patch
</a>
</li>
<li class="file-stats">
<a href="#e47cb1a5863bf3a417e62dfa9a72f801cd6d3afe">
debian/patches/fix_sequence_of_linked_libs.patch
</a>
</li>
<li class="file-stats">
<a href="#04876df4215a9666af25987a0f1a6eafe80ade3b">
debian/patches/no_git_version
</a>
</li>
<li class="file-stats">
<a href="#44dc4f3e32ab8a228183c9e6e05e434df3239a45">
debian/patches/trim-file-prefix.patch
</a>
</li>
<li class="file-stats">
<a href="#51f41eca8f6413c77444e12fb0d221cbe1313344">
faidx.c
</a>
</li>
<li class="file-stats">
<a href="#1be55503d7d6c773586dc644e84b86a5536816d8">
hts.c
</a>
</li>
<li class="file-stats">
<a href="#00ad65eb0bb2ca2c84337bc85e68e67fa3c2f892">
htsfile.1
</a>
</li>
<li class="file-stats">
<a href="#311887dd5b3ab5b179a3a49d3591727bc6d91169">
htsfile.c
</a>
</li>
<li class="file-stats">
<a href="#d8c6282dc0cb65ac8021905b6ac9d13adb8a1315">
htslib-s3-plugin.7
</a>
</li>
<li class="file-stats">
<a href="#65ec9dc879b07286be654f20f37210e7dc044241">
<span class="new-file">
+
htslib.map
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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<a href="https://salsa.debian.org/med-team/htslib/-/compare/e317c71930b3248d0ba927d48ab5f8e39f50fb5e...2bd712a9c86fa7f217a84d612a6365cacd87b028">View it on GitLab</a>.
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