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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/samtools">Debian Med / samtools</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/f92998e436fe89a4c48ae159320ae51b304ed50b">f92998e4</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T20:34:13+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/16dda27071188b068c484d402b3b3aff78911855">16dda270</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T20:34:14+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.17</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/e038e7229534e04539feb6111428fb60cdc28870">e038e722</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T20:34:30+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.17'
Update to upstream version '1.17'
with Debian dir 7083a0de4b9ae81e7003016619b5c4804d76e36c</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/99aa7c6bbbbce9ca071d790f40e9e6dfa3f7fddd">99aa7c6b</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T20:34:30+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/aebe148ff605dea27f1cd83c0ad446f6d8b895fa">aebe148f</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T20:37:00+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>samtools-fasta-q-whatis.patch: unfuzz
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/dac74908667ed0d469bc9daa5076ab43ad1ef0f7">dac74908</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T20:37:15+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: clean obsolete package from Breaks:
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/5d5421aefa261481e97e525260da7d4ed13aff8c">5d5421ae</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T20:38:38+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>update changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/66a6b6e0ae540c9d19db9874933dd273b2ed3c36">66a6b6e0</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T20:53:14+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: build depends on libhts-dev (>= 1.17~)
Trying to build against older versions will result at best with:
reset.c:107:20: warning: implicit declaration of function ‘bam_aux_first’; did you mean ‘bam_aux_get’? [-Wimplicit-function-declaration]
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/f3e3ea1a954c65a2c2b9fd887aade5fb04bec1d1">f3e3ea1a</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T20:54:37+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: build depends on libncurses-dev
This replaces the build dependency on libncurses5-dev, which is
flagged as obsolete by lintian.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/7adec78675ba7cbea4686b903ef163efdbd3bfce">7adec786</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T20:59:35+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/*.lintian-overrides: update mismatched override
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/1cc8cf9883be110a933313d336474387820cfcf0">1cc8cf98</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-12T23:27:59+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>update changelog
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
11 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
README
</a>
</li>
<li class="file-stats">
<a href="#a8c86a0fd0345dc5d362ba470fff0ab9a0fc7f1b">
amplicon_stats.c
</a>
</li>
<li class="file-stats">
<a href="#8b1f4a1b98b10acafd47fb3bc197a7f7410d59b6">
bam2bcf.c
</a>
</li>
<li class="file-stats">
<a href="#47e9e5b41a99db7f29a9c389319288b5be3dd44d">
bam2depth.c
</a>
</li>
<li class="file-stats">
<a href="#49977dcd2454890ef52ad55cab2161e1108da37c">
bam_ampliconclip.c
</a>
</li>
<li class="file-stats">
<a href="#a570bc81d25a3e7cca80a8fb33741c4cd427a6e0">
bam_consensus.c
</a>
</li>
<li class="file-stats">
<a href="#7e7625df357c73e60fb5763cc5124783c1c76fc6">
bam_import.c
</a>
</li>
<li class="file-stats">
<a href="#89a03e702f4bc3e36cdfde2781a3be558535682e">
bam_markdup.c
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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