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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/bcftools">Debian Med / bcftools</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/9e509566361c71f312d3c73505003c7267e8a7f5">9e509566</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-23T18:12:25+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/0c78f4bca0d875fc15e95088bc8fe5e7d92b00f7">0c78f4bc</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-23T18:12:26+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.17</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/8abb0708061d7df1e5475708b612fa5bebe52eff">8abb0708</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-23T18:12:39+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.17'
Update to upstream version '1.17'
with Debian dir cf539863f50773f7bf026cbdbc01acfeacb5dfa2</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/dcbcb60511132a51aa77facf209ac85a8d584352">dcbcb605</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-23T18:12:40+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/3c9ebacd0991631b737f8ee2a249930d150a984e">3c9ebacd</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-23T18:16:41+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/lintian-overrides: update mismatched override.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/8f385a9eb2c6abf2c05d26a2af8c0c7028afa98b">8f385a9e</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-23T18:18:15+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>2to3.patch: declare forwarding unneeded.
Only changes are the shebang and future import, making the initial
script somewhat agnistic of the python major version, and the patch
enforces use of python3.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/09a62eafaf07b6bcebc48ef5b933c310834becc3">09a62eaf</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-23T18:25:11+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>skip_new_test_failing_on_32bit.patch: use the Bug field.
The patch was initially documenting upstream issue with a Bug-Upstream
field instead of using the dedicated Bug field from DEP3, confusing
scanners to identify outstanding problems left to forward upstream.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/c94f45cc0ef4055105be40e27d45798889f5b366">c94f45cc</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-06-23T18:54:45+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>ready to upload to unstable.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
20 changed files:
</h4>
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<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
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<li class="file-stats">
<a href="#cab3264be7ac8d7f9421a4fc2db77c8dab7789c2">
abuf.c
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<li class="file-stats">
<a href="#8b1f4a1b98b10acafd47fb3bc197a7f7410d59b6">
bam2bcf.c
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<li class="file-stats">
<a href="#ab59ac9ac0b8f07cee5abaaaee8685d16392b65f">
bam2bcf.h
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<li class="file-stats">
<a href="#55fd211cb88ea0438363e3fdc1174c29ac781f39">
<span class="new-file">
+
bam2bcf_iaux.c
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<li class="file-stats">
<a href="#55d526d38175f560f59823e6cd8f14ecfdf72717">
bam2bcf_indel.c
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<li class="file-stats">
<a href="#641a99f352653ad820a68a93f5671b3ec50e4ef6">
bcftools.h
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<li class="file-stats">
<a href="#b2091719a3e2f14f05d382903fbfd2391dee72e9">
<span class="new-file">
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cigar_state.h
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<li class="file-stats">
<a href="#b5ff23f6805c7e214151156ce56e18a4ed804010">
consensus.c
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<li class="file-stats">
<a href="#cb9f132eb7ad36b0e293b828436290909d1203e3">
convert.c
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<li class="file-stats">
<a href="#ffca347bb50053be91e2750c17cb4f76fe9ab21c">
csq.c
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#efc7fe57b5983b0283c6410fceef7e74f687aeb5">
debian/lintian-overrides
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<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
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<li class="file-stats">
<a href="#a6bcfca35e835c1297fe9b2d4cfe4630534f3ea5">
debian/patches/skip_new_test_failing_on_32bit.patch
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<li class="file-stats">
<a href="#155bba183d1c525bb29e6a8f0a6f4d5203059fad">
doc/bcftools.1
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<li class="file-stats">
<a href="#10c81da16b14b79039d2fb8ea89464665683576e">
doc/bcftools.html
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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