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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch upstream at <a href="https://salsa.debian.org/med-team/picard-tools">Debian Med / picard-tools</a>
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Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/1c5e7dd6f007673eaa76c8e13d795332acd01ced">1c5e7dd6</a></strong>
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<span> by Pierre Gruet </span> <i> at 2023-06-20T16:15:45+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.0.0+dfsg</pre>
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30 changed files:
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.github/ISSUE_TEMPLATE.md
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.github/PULL_REQUEST_TEMPLATE.md
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.github/workflows/tests.yml
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.travis.yml
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Dockerfile
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README.md
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build.gradle
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gradle/wrapper/gradle-wrapper.properties
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<a href="#5bbfa66edb4db3c7c33c5181f43510990d3307f9">
gradlew
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src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
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src/main/java/picard/analysis/CollectMultipleMetrics.java
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src/main/java/picard/analysis/CompareMetrics.java
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src/main/java/picard/arrays/CollectArraysVariantCallingMetrics.java
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<a href="#f91c189fd4550d2b3a19984cf8214fc36e993efb">
src/main/java/picard/arrays/GtcToVcf.java
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src/main/java/picard/arrays/VcfToAdpc.java
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src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifest.java
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src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecord.java
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src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecordCreator.java
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src/main/java/picard/arrays/illumina/CreateExtendedIlluminaManifest.java
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src/main/java/picard/arrays/illumina/IlluminaManifest.java
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src/main/java/picard/arrays/illumina/IlluminaManifestRecord.java
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src/main/java/picard/arrays/illumina/InfiniumNormalizationManifest.java
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src/main/java/picard/cmdline/ClassFinder.java
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src/main/java/picard/cmdline/CommandLineProgram.java
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src/main/java/picard/cmdline/PicardCommandLine.java
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src/main/java/picard/fingerprint/CheckFingerprint.java
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src/main/java/picard/fingerprint/CrosscheckFingerprints.java
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src/main/java/picard/fingerprint/CrosscheckMetric.java
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src/main/java/picard/fingerprint/Fingerprint.java
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<a href="#785cd63b1416a086e5bb4a3119c81f45982e6d46">
src/main/java/picard/fingerprint/FingerprintUtils.java
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The diff was not included because it is too large.
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