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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>
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Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/9d4cb9e414c839ff87893d80a5817df9aaed8f7a">9d4cb9e4</a></strong>
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<span> by Andreas Tille </span> <i> at 2023-07-11T17:22:28+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/189bfac99f15903e6e414908112905fb79b68712">189bfac9</a></strong>
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<span> by Andreas Tille </span> <i> at 2023-07-11T17:22:29+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.1.8</pre>
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/102c59bf1c995942de3183c9f2e5c9ce5ccf33c8">102c59bf</a></strong>
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<span> by Andreas Tille </span> <i> at 2023-07-11T17:22:44+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.1.8'
Update to upstream version '2.1.8'
with Debian dir 1e6891f066a05fb380137086b0623a9c6c5a2aba</pre>
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<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/acd3e42bf387d2c39ba5945937b8a6fc7a526778">acd3e42b</a></strong>
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<span> by Andreas Tille </span> <i> at 2023-07-11T17:27:15+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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Dockerfile
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README.md
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debian/changelog
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debian/control
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src/ChangeLog
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<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">
src/align/align.cpp
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src/align/extend.cpp
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src/align/extend_chunk.h
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src/align/gapped_filter.cpp
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src/align/gapped_score.cpp
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src/align/global_ranking/extend.cpp
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src/align/global_ranking/table.cpp
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src/align/legacy/banded_swipe_pipeline.cpp
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src/align/legacy/query_mapper.cpp
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src/align/output.cpp
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src/align/ungapped.cpp
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src/basic/basic.cpp
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src/basic/config.cpp
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src/basic/config.h
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src/basic/const.h
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src/basic/hssp.cpp
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src/basic/match.h
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src/basic/packed_loc.h
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src/basic/seed_iterator.h
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src/basic/value.h
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src/chaining/greedy_align.cpp
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src/cluster/cascaded/cascaded.cpp
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<a href="#58d7c1b60192f25ddb57682da626d8207f8b0cf9">
src/cluster/cascaded/recluster.cpp
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The diff was not included because it is too large.
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