<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "Menlo"), DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/seqan-raptor">Debian Med / seqan-raptor</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-raptor/-/commit/648ddf4df89d02c0d4695f00f3dbcb9ba655c60e">648ddf4d</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-07-11T14:16:20+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/watch: find complete source archives.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-raptor/-/commit/64d13f811f0c6407e91039a699cfd6940da13a08">64d13f81</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-07-11T14:17:00+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-raptor/-/commit/78f1b0ebed0dea45aded971b7b3d0aea941d6aca">78f1b0eb</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-07-11T14:17:01+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.0.0+ds</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-raptor/-/commit/8f822c5ee3e9912775a985d94ef52b37bef2ea41">8f822c5e</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-07-11T14:17:05+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/3.0.0+ds'

Update to upstream version '3.0.0+ds'
with Debian dir 2095c3c82fc835c5fa1f6f3ff00876532e0a174b</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-raptor/-/commit/439b919e7271d33c5fd59eaa606932005eb9f20b">439b919e</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-07-11T14:17:05+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-raptor/-/commit/e163c65cfcf362d5ebdaa0a3171551321479d4cb">e163c65c</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-07-11T16:25:23+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Apply multi-arch hints.
+ seqan-raptor-doc: Add Multi-Arch: foreign.

Changes-By: apply-multiarch-hints
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-raptor/-/commit/1c3825f7ce8b95ef8c64ebb1767197ce763dc30f">1c3825f7</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-07-12T13:37:58+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh patches.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-raptor/-/commit/205a51c61aed04cab249504cb0318775808439ed">205a51c6</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-07-12T13:38:17+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: bump minimum Seqan3 build-dep to 3.2.0+ds-7 to grab GCC 12.3+ fix.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-raptor/-/commit/e941def4cdd680ae8e5d0b6c0f8693d78a7eaf65">e941def4</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-07-12T13:38:47+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Cherry-pick patch from upstream to enable seqan-raptor 3.0.0 to build.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#d94622672672a69390631d825d55c7582120624e">
.codecov.yml
</a>
</li>
<li class="file-stats">
<a href="#091aff741808a09242f252264b14f4a9adaa5305">
<span class="new-file">
+
.github/dependabot.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#fa2ef279d72bbdc788e8a4fe69d4a1f03a6b28da">
<span class="new-file">
+
.github/workflows/ci_codeql.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#e0c9c79cd7c2b036f3d4af7052ff640f10db03fb">
.github/workflows/ci_coverage.yml
</a>
</li>
<li class="file-stats">
<a href="#39b8f64f600d6f82ecd6ff09faf59350515150e1">
.github/workflows/clang_format.yml

.github/workflows/ci_lint.yml
</a>
</li>
<li class="file-stats">
<a href="#f3a9b35ab9fe12949c3238e30691ccc8ee835234">
.github/workflows/ci_linux.yml
</a>
</li>
<li class="file-stats">
<a href="#21bdc8d15d8465a764ea4114626f9fa34bf5d115">
.github/workflows/ci_macos.yml
</a>
</li>
<li class="file-stats">
<a href="#f505e4233ce49fad1415a4b7e326524efaff7d89">
.github/workflows/ci_misc.yml
</a>
</li>
<li class="file-stats">
<a href="#7712c02818e4ae5d1106bbb1bcdae11a489f6708">
<span class="new-file">
+
.github/workflows/ci_sanitizer.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#236e68fe0cc34029b27ab56622f9663e61f782d5">
.github/workflows/ci_util.yml

.github/workflows/ci_utility.yml
</a>
</li>
<li class="file-stats">
<a href="#35909784d6231d577fb6343cb2b50a9389bd8b60">
.github/workflows/ci_nextflow.yml

.github/workflows/ci_workflows.yml
</a>
</li>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
.gitmodules
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#0834ae016f8fea5cff771880c0be1d55299732ff">
<span class="new-file">
+
CODE_OF_CONDUCT.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#4a8486805915245bbbe2e3c8c1a9d680c6843a82">
LICENSE.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#b125bfb71f7c9b1293182d2416353645ff1df753">
<span class="new-file">
+
build_system/raptor-config-version.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#d9684531f9922d5c6422184ae6b2eb2e50699242">
<span class="new-file">
+
build_system/raptor-config.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#50c0329ce2b5f6f7359df4e31c5d56581371cb3d">
<span class="new-file">
+
build_system/raptor-install.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#6f49233f83e1b1bd84718a711664eadcd2fcc1ea">
<span class="new-file">
+
build_system/raptor-package.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#2ab919150b3f775e58668eb80d6dd504947de087">
<span class="deleted-file">

cmake/raptor_require_benchmark.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#9f4fba98730a37a0bd38de2faad8c44af6b02871">
<span class="deleted-file">

debian/patches/chopper_no_ccache
</span>
</a>
</li>
<li class="file-stats">
<a href="#284336a1066a274790c59a25808fb049c4c54952">
debian/patches/chopper_no_test
</a>
</li>
<li class="file-stats">
<a href="#a626394bb55b06d481bca22e6ccf8434c2812d6f">
<span class="deleted-file">

debian/patches/debian_gtest
</span>
</a>
</li>
<li class="file-stats">
<a href="#c5e4319ad1b1be90dae4fcdb2d12a5f60ab243c5">
debian/patches/debian_seqan3
</a>
</li>
<li class="file-stats">
<a href="#4219527831c3ae721541904076a2a1d2e1850613">
debian/patches/debian_xxhash
</a>
</li>
<li class="file-stats">
<a href="#f7fb99ff234957bf1deef479cbdf76557d692510">
<span class="new-file">
+
debian/patches/fix_missing_lambda_capture.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#1c4157ef3ebf1ee00fc02c93c1f70b65023a68c2">
debian/patches/privacy
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/seqan-raptor/-/compare/63f577ce84ac563d10a1b4deeb552f02a9bc1c39...e941def4cdd680ae8e5d0b6c0f8693d78a7eaf65">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>



</p>
</div>
</body>
</html>