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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/uncalled">Debian Med / uncalled</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/uncalled/-/commit/62b3012c245df085bf58a8e786631b98dbfe36db">62b3012c</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-07-13T15:38:18+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.3+ds</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/uncalled/-/commit/3ec8a3bd517108be1f93c7e7b5fd2bf00336e5ce">3ec8a3bd</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-07-13T15:38:18+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/uncalled/-/commit/a7d2486aceca350a5a53386e0bfca0c3263ea633">a7d2486a</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-07-13T15:38:19+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.3+ds'
Update to upstream version '2.3+ds'
with Debian dir 55e7acd06fe98a796a42ed9c9b04407cce237433</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/uncalled/-/commit/0bce918f37caad5fd6b572dc88edfc2a7dec9f48">0bce918f</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-07-13T15:38:19+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/uncalled/-/commit/0bb2b721130e4fbcb44334de6de74483682cc535">0bb2b721</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-07-13T15:38:29+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Set upstream metadata fields: Bug-Submit.
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/uncalled/-/commit/39d685081f465b189cb1a4df904353f494d3317b">39d68508</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-07-13T16:39:11+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>efresh patches
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#b2ab4c8a863eeb0e4658dd5759a2f7906da8f42b">
<span class="deleted-file">
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debian/patches/32bit
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<li class="file-stats">
<a href="#43def08de328d787fdf88db0bc6a4d33199fb3c8">
debian/patches/debian_fast5
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<li class="file-stats">
<a href="#45fada16ddbeb8f0317515a01e486c1cbfe48b07">
debian/patches/debian_hdf5
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</li>
<li class="file-stats">
<a href="#f8ce3db11828c7e7c8dd1dc34100156392d49040">
debian/patches/debian_pdqsort
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<li class="file-stats">
<a href="#49bf2f5ff167a64383cca065e439b24791154cf9">
debian/patches/debian_toml11.patch
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<li class="file-stats">
<a href="#130e01490ff0303fc154d1efa48f1931b4566428">
<span class="deleted-file">
−
debian/patches/fix_debug
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#e5330d2af6cabecab89d524d6bb6e568d259a481">
debian/patches/skip_read_until
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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</li>
<li class="file-stats">
<a href="#fa7e0cbe2d74e415e80e11f0153857c119448b37">
scripts/uncalled
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</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#d79b2c17d31e9b63ca5a576f22aa6e865cd77d6e">
src/bwa_index.hpp
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<li class="file-stats">
<a href="#aaef030e09d945d203abae7a7f933bd2c0d5c0b7">
src/conf.hpp
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<li class="file-stats">
<a href="#8a73592b65cab37cae65ad5521b8f4c7bdab8d4e">
src/dtw.hpp
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<li class="file-stats">
<a href="#e263844cd554912384e1631ab8e14db3d2cb2469">
src/dtw_test.cpp
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<li class="file-stats">
<a href="#19aa164df9f8dc6fd6d0ac9277e786f246cb13a8">
src/event_detector.cpp
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<li class="file-stats">
<a href="#4dd7390c94d64c9c02039a9755ce3c32b83f17ac">
src/event_profiler.hpp
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<li class="file-stats">
<a href="#d9e5a0b189fb1f5de5b808b09e86c9fc4b08f4f7">
src/map_pool_ord.cpp
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<li class="file-stats">
<a href="#65cdc7313f98ed7d76d8a30f5fdea5980ed187cb">
src/mapper.cpp
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<li class="file-stats">
<a href="#df66370e90d6174d07ca6cef34eb88ae511a2cda">
src/mapper.hpp
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<li class="file-stats">
<a href="#0b0131ba2d4f27897c2f4045d5feb296a43eb012">
src/pore_model.hpp
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<li class="file-stats">
<a href="#10f186c30467ccf25f74f9966fdaaf82d217b3f8">
src/pybinder.cpp
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<li class="file-stats">
<a href="#4d5da27359709f82754417439b262268f0ffc949">
src/range.cpp
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<li class="file-stats">
<a href="#52171b8db5affacb885673df8fceb8a448dd86e8">
src/read_buffer.cpp
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<li class="file-stats">
<a href="#baae51e3bc6569ba8450972647c370e19b502e86">
src/uncalled_map_ord.cpp
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<li class="file-stats">
<a href="#7cc8057ca18bde910de8508d5e0ff6f004206e02">
uncalled/__init__.py
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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<a href="https://salsa.debian.org/med-team/uncalled/-/compare/5241a71d2eb37ec5a5d419d0c6a720ed78a73f59...39d685081f465b189cb1a4df904353f494d3317b">View it on GitLab</a>.
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