<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "Menlo"), DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/toil/-/commit/45d2e66fd40ecd9cfbcc665d3efffe8b98242578">45d2e66f</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-07-13T15:37:33+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 5.11.0</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#091aff741808a09242f252264b14f4a9adaa5305">
.github/dependabot.yml
</a>
</li>
<li class="file-stats">
<a href="#c3aa8b7f1c613e43d3bb9d5ac52ac6603d945e89">
.github/workflows/codeql-analysis.yml
</a>
</li>
<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#889c91308449c65c309146f6487ae74af64de5e9">
contrib/admin/mypy-with-ignore.py
</a>
</li>
<li class="file-stats">
<a href="#1bb7dd9b86c17fdc59275faf0c2e42101a532ad8">
contrib/slurm-test/docker-compose.yml
</a>
</li>
<li class="file-stats">
<a href="#0aedc60470678ece7ebbdf7ca05da313d67367a0">
contrib/slurm-test/slurm_test.sh
</a>
</li>
<li class="file-stats">
<a href="#d807c24a76d4ce4f9a5fb9b51a34ba348080e3df">
contrib/toil-ci-prebake/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#3f4c1daa84110ac0a1cf43167520d6d8737bc806">
docs/Makefile
</a>
</li>
<li class="file-stats">
<a href="#f99c72d2aacbf31ded1872c66de3f988dced0301">
docs/appendices/environment_vars.rst
</a>
</li>
<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
</a>
</li>
<li class="file-stats">
<a href="#5e25feb6b25012c00d6a27af4470f92ec5ccb67b">
docs/developingWorkflows/developing.rst
</a>
</li>
<li class="file-stats">
<a href="#cb68afc308ca15806a65063b4c55b2e92ad56918">
docs/developingWorkflows/toilAPI.rst
</a>
</li>
<li class="file-stats">
<a href="#9b7b19eaf87ceb524470a920a457425b602cd816">
docs/developingWorkflows/toilAPIBatchsystem.rst
</a>
</li>
<li class="file-stats">
<a href="#9f6414ca77b92d2d0f1a537d218bd3748979cdbe">
docs/developingWorkflows/toilAPIExceptions.rst
</a>
</li>
<li class="file-stats">
<a href="#cb9729d9831b9bd58e9bb638cc0c36e12ae1d1c1">
docs/developingWorkflows/toilAPIFilestore.rst
</a>
</li>
<li class="file-stats">
<a href="#36d885cd3f91b45ce9a136aeb738e81774045af9">
docs/developingWorkflows/toilAPIJobFunctions.rst
</a>
</li>
<li class="file-stats">
<a href="#1ac938d3aea8e55163f6cfcb7b25e2079c3c402f">
docs/developingWorkflows/toilAPIJobstore.rst
</a>
</li>
<li class="file-stats">
<a href="#42fb6e892548da83befd6b9b6ddb7d9a96bab31d">
docs/developingWorkflows/toilAPIMethods.rst
</a>
</li>
<li class="file-stats">
<a href="#a3b0713ff88b755b20cd6b71fb5880d3902f5025">
docs/developingWorkflows/toilAPIRunner.rst
</a>
</li>
<li class="file-stats">
<a href="#6121126f6702a4bb85f20e9bb91431c898205305">
docs/developingWorkflows/toilAPIService.rst
</a>
</li>
<li class="file-stats">
<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
</a>
</li>
<li class="file-stats">
<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">
docs/running/cliOptions.rst
</a>
</li>
<li class="file-stats">
<a href="#8e4430ed91538c989bbba29d0f6541cce24a88d1">
docs/running/cloud/amazon.rst
</a>
</li>
<li class="file-stats">
<a href="#70b5c097c4e102be40b0cbc3b0321bdec8cb6e10">
docs/running/cloud/kubernetes.rst
</a>
</li>
<li class="file-stats">
<a href="#3ddb5d0ba5a4dbf1da596fd4e9b7eafb950d778d">
docs/running/wdl.rst
</a>
</li>
<li class="file-stats">
<a href="#94ef85ac03a9b3926d1726c51aaf7e720200965d">
requirements-aws.txt
</a>
</li>
<li class="file-stats">
<a href="#b1f2507748c66f157346e017893778f0bef7bab0">
requirements-cwl.txt
</a>
</li>
<li class="file-stats">
<a href="#f4fb69164b97e1b6f17984369c9c382573a3f919">
requirements-dev.txt
</a>
</li>
<li class="file-stats">
<a href="#ba1737f2ce7d642bbfa3bdf256e038820d8cc5ca">
requirements-google.txt
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/toil/-/commit/45d2e66fd40ecd9cfbcc665d3efffe8b98242578">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/toil/-/commit/45d2e66fd40ecd9cfbcc665d3efffe8b98242578"}}</script>


</p>
</div>
</body>
</html>