<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "Menlo"), DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/augur">Debian Med / augur</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/augur/-/commit/f72b0d9f681c1889b6ec1251c0229a39fbc568cb">f72b0d9f</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-07-18T16:38:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 22.1.0</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/augur/-/commit/8765d1973ba27764c90edb7b08446933b18690a5">8765d197</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-07-18T16:38:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/augur/-/commit/3f46c07027c50664d9c1992a35d3abc7953bea8f">3f46c070</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-07-18T16:39:02+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/22.1.0'
Update to upstream version '22.1.0'
with Debian dir 1e43594bb18dc83874e01e92091f11d6565e5529</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/augur/-/commit/954bb0798c38757cbb3c13a68fafd07f2f6215f7">954bb079</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-07-18T22:48:03+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: checks depend on mypy and python3-typeshed.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/augur/-/commit/25007c94955838db484d5b3403e246f2aa242b12">25007c94</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-07-18T22:49:00+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: copy mypy.ini to pybuild directories.
This file is necessary to mypy, and the test item is run outside the
source directory context.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/augur/-/commit/2a3e3f249ea3a7e34e93056960d18cdb2abd80a5">2a3e3f24</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-07-18T22:50:44+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>missing-imports.patch: new: missing pandas types.
The pandas types are necessary for running the mypy test successfully,
but these types are not available (yet), so the missing imports must
be ignored for that module too.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/augur/-/commit/2d878b9d48a4c70f2482967a6e6a9f7b7be4e7cc">2d878b9d</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-07-18T22:52:17+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/t/control: autopkgtest also depend on mypy and typeshed.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/augur/-/commit/7c5d9526f23a255b553ff89c0a01d3cf935d27ca">7c5d9526</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-07-18T23:03:09+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>ready to upload to unstable.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#81ccd5c4e1f93eb3ab80c73b5532455bf4f82fe9">
.readthedocs.yml
</a>
</li>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#a1a05fb3eb681edc11e8c987f65967f416af0ee1">
augur/__version__.py
</a>
</li>
<li class="file-stats">
<a href="#bb76796c5cc72d0d793ca79a16fcc39c7558002d">
augur/argparse_.py
</a>
</li>
<li class="file-stats">
<a href="#4b2cb3fd2c6295549feab623262a7cf668060f30">
augur/curate/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#5cbf9b0c8cc23facd1774a3a4a86f651e64e3efa">
<span class="new-file">
+
augur/curate/format_dates.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#a464a507cbcfe5d54097553b2381ac4c67b6ec23">
<span class="new-file">
+
augur/curate/format_dates_directives.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#115af9080d0d8b00261609b39b151188f7b8c4e0">
augur/dates/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#30a665ea1e4ac79f38beb7b999ab740582bdd252">
augur/export_v1.py
</a>
</li>
<li class="file-stats">
<a href="#7051dc1354d6bc0d4b68367cda18a5846f82adb6">
augur/export_v2.py
</a>
</li>
<li class="file-stats">
<a href="#a5c2dcec326ca242aabcf55f6878d55b20c35368">
augur/filter/_run.py
</a>
</li>
<li class="file-stats">
<a href="#457d59fed48d10a87e557ecaa12091afa6423c8c">
augur/filter/include_exclude_rules.py
</a>
</li>
<li class="file-stats">
<a href="#2f398d4f40bea172fd4bcfdf5f27f9f63c9d3bf4">
augur/filter/subsample.py
</a>
</li>
<li class="file-stats">
<a href="#6f472ebe2f0cdadd2929544cafb4b0e1fb8a0290">
augur/frequencies.py
</a>
</li>
<li class="file-stats">
<a href="#8927b2a55ef70fe140e26c63d675ba40a581aa1d">
augur/io/file.py
</a>
</li>
<li class="file-stats">
<a href="#c1e4d09f11261aac0c34eaba71163e546ad1741a">
augur/io/metadata.py
</a>
</li>
<li class="file-stats">
<a href="#94f155001fa249c55e22aa43e0d4173763e436bc">
augur/io/shell_command_runner.py
</a>
</li>
<li class="file-stats">
<a href="#51a81f540a747f2ec07de2c70e6445ae9b8e206c">
augur/parse.py
</a>
</li>
<li class="file-stats">
<a href="#104ddc27c2db78b040d33b5412a2de3d66f15177">
augur/refine.py
</a>
</li>
<li class="file-stats">
<a href="#8fe68be9db3907a4225b9cec4479db0ce65665e8">
augur/titer_model.py
</a>
</li>
<li class="file-stats">
<a href="#44b2d941b13286b286211f8840bf47c29fde3e65">
augur/traits.py
</a>
</li>
<li class="file-stats">
<a href="#0d0305472fcbc5cf656b5d71a25dfd30c8c8d131">
augur/utils.py
</a>
</li>
<li class="file-stats">
<a href="#1b6863ec5e167676f738dbfa3b4fc0930272f65c">
augur/validate.py
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#8c3224769e2f2c6878de388d103a34cb25da413a">
<span class="new-file">
+
debian/patches/missing-imports.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<span class="new-file">
+
debian/patches/series
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
</a>
</li>
<li class="file-stats">
<a href="#73cc809ba2916206462a7eb6005867f214a34fcc">
docs/contribute/DEV_DOCS.md
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">
—
<br>
<a href="https://salsa.debian.org/med-team/augur/-/compare/8308d8c35c688e768f10d1c0c75ec601c371f8d4...7c5d9526f23a255b553ff89c0a01d3cf935d27ca">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
</p>
</div>
</body>
</html>