<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "Menlo"), DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/seqan-needle">Debian Med / seqan-needle</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-needle/-/commit/0d239deae7d89eb92a401db771d7a4bb3d752ac0">0d239dea</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-09T16:02:49+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.0.1.0.1.git.439eeab+ds</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-needle/-/commit/192fb387f0ad0b886e4b2ea706a6be0e4b01634e">192fb387</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-09T16:03:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.0.1.0.1.git.439eeab+ds'
Update to upstream version '1.0.1.0.1.git.439eeab+ds'
with Debian dir fad8bf5d1e7a0b48b9f218f24102c80e82d18d73</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-needle/-/commit/842b67fe0b666c6b97df04b36884e79f0ab930fe">842b67fe</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-09T16:08:36+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream snapshot.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-needle/-/commit/8edbf7a4928283e22b877965fa93280a90b45d32">8edbf7a4</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-09T16:08:48+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: refresh; drop spelling patch (applied upstream).
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-needle/-/commit/525ba1fc0da1cec543e7689ff46e3b55d0ee6033">525ba1fc</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-09T17:26:46+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: cherry-pick from upstream for Seqan 3.3.0
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-needle/-/commit/5844ee599005ccfb43e0a3c5e8d64cc813dd25aa">5844ee59</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-09T17:40:47+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-needle/-/commit/9c618b7c2e287a33a59b82131c9b2c2bd5b16de7">9c618b7c</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-09T17:41:10+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Set upstream metadata fields: Bug-Submit.
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/seqan-needle/-/commit/caf226e4ffe26ea0738fb53fa01c82f2867ae9b7">caf226e4</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-09T17:41:39+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#9bbf2672a692ee7c55ff343de5c95ed2e981752c">
<span class="new-file">
+
debian/patches/743f0c2db4ed59aeb6b76744aa8485f208b9f9d2.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#5e61b60cf866f5d0dc5e59df781a8a855692455b">
debian/patches/create_doc_without_previous_binary_build.patch
</a>
</li>
<li class="file-stats">
<a href="#1c4157ef3ebf1ee00fc02c93c1f70b65023a68c2">
debian/patches/privacy
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
<span class="deleted-file">
−
debian/patches/spelling.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#5c06143469184bc23cf30bba628a6bf2b501dfa5">
include/ibf.h
</a>
</li>
<li class="file-stats">
<a href="#2767730498d1158cca3f2041cf7cea75a2186161">
src/estimate.cpp
</a>
</li>
<li class="file-stats">
<a href="#17678796a1e10e2b074078fe501facab3f1b1f5e">
src/ibf.cpp
</a>
</li>
<li class="file-stats">
<a href="#b958235ee8db37bcaceda04b6d55553b450c2db4">
src/main.cpp
</a>
</li>
<li class="file-stats">
<a href="#d45c9ac471f3f1de2ec52d5c310fd93dc4d0000d">
test/api/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#e8326ccefe4a88cbe0f8baf00bf9b8ad2dec53f6">
test/api/count_test.cpp
</a>
</li>
<li class="file-stats">
<a href="#2488926ca9e98433d1a04c218408ede6b31e9395">
test/api/estimate_test.cpp
</a>
</li>
<li class="file-stats">
<a href="#cc215adb0d2cc85cf4f8cf04a9f4d7702cd48eda">
<span class="new-file">
+
test/api/insert_delete_test.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#c4f50ba5a334a0aa58ba62159683b68996f0c2fd">
test/cli/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#714293ee8bb4d9411dbab75e82e4fe91fc852644">
test/cli/count_options_test.cpp
</a>
</li>
<li class="file-stats">
<a href="#7f47db08a48d65c6bd58d6db9896ea7e48a19adb">
<span class="new-file">
+
test/cli/delete_options_test.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#2ba970dd0843c3dadf4a72c5e45f4290120cd445">
<span class="new-file">
+
test/cli/insert_options_test.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#51790e0bbf23d75cb4274dd45d214371c5ddbed5">
test/cli/needle_options_test.cpp
</a>
</li>
<li class="file-stats">
<a href="#7ee37666fd572be9da08c7837a88b11667638eeb">
test/data/datasources.cmake
</a>
</li>
<li class="file-stats">
<a href="#d2d6262fa47d297b5eef93af730182f88d0d48d6">
<span class="new-file">
+
test/data/mini_gen.genome
</span>
</a>
</li>
<li class="file-stats">
<a href="#4fe69c7550422c644cdfd16a9e05295dec79369b">
<span class="new-file">
+
test/data/mini_gen2.genome
</span>
</a>
</li>
<li class="file-stats">
<a href="#70f39712b5035c131e0ccc6eef650982edbb49e7">
<span class="new-file">
+
utils/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#76de1eaa4622dd67df6b11b12d75df539988172f">
<span class="new-file">
+
utils/accession.lst
</span>
</a>
</li>
<li class="file-stats">
<a href="#db1921bfec8c1b3e95aab424202947bca3cb4e6d">
<span class="new-file">
+
utils/breastcancer.R
</span>
</a>
</li>
<li class="file-stats">
<a href="#a42d5b921cf2759cd4ede971ffbead3b53b1dacd">
<span class="new-file">
+
utils/breastcancer_big.R
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c2de23978a8b560133b1fdec2184fa8ec21dafd">
<span class="new-file">
+
utils/experiments.out
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">
—
<br>
<a href="https://salsa.debian.org/med-team/seqan-needle/-/compare/f1d6d2d473a9badb6431686e33caad4fb2ebdff2...caf226e4ffe26ea0738fb53fa01c82f2867ae9b7">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
</p>
</div>
</body>
</html>