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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/phyx">Debian Med / phyx</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/phyx/-/commit/3847b64c450e81572b02d6ddf9bbc2880c3c4711">3847b64c</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-12T22:44:42+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.3.1+ds</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/phyx/-/commit/0ac91f36fb2df73bc068a8b729c6d00aced62db6">0ac91f36</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-12T22:44:42+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/phyx/-/commit/ad1eeb561eefb4a3042a961a2af6f715141c3f38">ad1eeb56</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-12T22:44:45+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.3.1+ds'
Update to upstream version '1.3.1+ds'
with Debian dir 1f4cff6e33a73d8887cf8bcb7a2146635b512cb3</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/phyx/-/commit/9f3b882e8a4395c58b1ba43e055ccb0e3914e68a">9f3b882e</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-12T22:44:46+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/phyx/-/commit/d3d061a7d0f504573f401152b73bc14752a2d0a1">d3d061a7</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-12T22:51:55+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>hardening.patch: delete: applied upstream.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/phyx/-/commit/a0f04f740f597fae2c274f0d89a95b58b28c0445">a0f04f74</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-12T22:52:18+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>build-more-programs.patch: refresh.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/phyx/-/commit/203d3d14a39bccf797ae712cde57ae73283ee1bd">203d3d14</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-12T23:59:58+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>deoptimize.patch: new: fix ftbfs with gcc-13.
This disables building phyx with -ffast-math.
Closes: #1037817
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/phyx/-/commit/b909cacffc5ec6fa7f54c16a77b0bfcff19a2719">b909cacf</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-13T00:01:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: remove -ffloat-store for i386.
Upstream included this change in their build routines.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/phyx/-/commit/bed3ad84e2fb5912f3e8979023024b0706dbe09e">bed3ad84</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-13T00:11:15+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>ready to upload to unstable.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#962a68bba6527e758faa32a76c8331900a9078b0">
.github/workflows/build-test.yml
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#5ab16530a004084ca4c91038966b19a7984db7f3">
debian/patches/build-more-programs.patch
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debian/patches/deoptimize.patch
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debian/patches/hardening.patch
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debian/patches/series
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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doc/Programs.md
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src/Makefile.in
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src/TEST/un_aln_nuc_mixed-stop.fa
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src/aa2cdn.cpp
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src/aa2cdn.h
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src/clean_seq.cpp
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src/clean_seq.h
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src/comp_test.cpp
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src/generate_manpages.py
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src/main_aa2cdn.cpp
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src/main_bd_fit.cpp
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src/main_bd_sim.cpp
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src/main_boot.cpp
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src/main_bp.cpp
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src/main_cat.cpp
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src/main_clsq.cpp
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src/main_cltr.cpp
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src/main_colt.cpp
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src/main_comp.cpp
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The diff was not included because it is too large.
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