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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch upstream at <a href="https://salsa.debian.org/med-team/pbbam">Debian Med / pbbam</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/0f2ddb12450f80a4adea9c338e205ae8a646324d">0f2ddb12</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-13T14:05:55+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.3.0+dfsg</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#feedf4d0444f717d7227468a9529c2cf9740b6fd">
include/meson.build
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</li>
<li class="file-stats">
<a href="#0b230145bb13dc51db1e0e68ac2723313ee229a9">
<span class="deleted-file">
−
include/pbbam/Accuracy.h
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</a>
</li>
<li class="file-stats">
<a href="#9b8e7465fdabd2180a1985fc676ea4cf29c95d7d">
include/pbbam/BaiIndexedBamReader.h
</a>
</li>
<li class="file-stats">
<a href="#97939080c14fd57f90725f590b1094f8f0ee9f10">
include/pbbam/BamRecord.h
</a>
</li>
<li class="file-stats">
<a href="#6f0af9cd5ecfc522cf50a17f98ffea7c95f16624">
include/pbbam/BamRecordImpl.h
</a>
</li>
<li class="file-stats">
<a href="#b96a662b54ae36b7eea4f8ddbc5f90133ff94dff">
include/pbbam/BamRecordView.h
</a>
</li>
<li class="file-stats">
<a href="#d0cddba547d6512eef96021d550c8018285b3c44">
<span class="deleted-file">
−
include/pbbam/Cigar.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#982c4f6ff634e1c39fba108b42047dcb77486750">
<span class="deleted-file">
−
include/pbbam/CigarOperation.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#180b1c98d5315b40042488cfb6dc31f5165a5ea1">
include/pbbam/CompositeBamReader.h
</a>
</li>
<li class="file-stats">
<a href="#13e6f05c8e887e418c96dbd9ea25d2567e409652">
include/pbbam/DataSet.h
</a>
</li>
<li class="file-stats">
<a href="#a816d13a982952ef5ed2842d74208d1c5225d058">
include/pbbam/FastqSequence.h
</a>
</li>
<li class="file-stats">
<a href="#82bc8f04215d21341f050baa6b6ca0c663133041">
<span class="deleted-file">
−
include/pbbam/Frames.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#d8f23a330be6b7881d87bf9e5a7c74b929c6b975">
<span class="deleted-file">
−
include/pbbam/GenomicInterval.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#30f06765982715974134a49d4e7acad7c82febb2">
include/pbbam/IndexedFastaReader.h
</a>
</li>
<li class="file-stats">
<a href="#b3b1d38b29ff957eaa33e2da5fd45bae5d0319df">
include/pbbam/IndexedFastqReader.h
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<li class="file-stats">
<a href="#6d084577b32e408e267e9a7433c8fcd63a278d49">
<span class="deleted-file">
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include/pbbam/Interval.h
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</a>
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<li class="file-stats">
<a href="#54d0ea5117a99f2e717060643061b9a16bbb0825">
<span class="deleted-file">
−
include/pbbam/LocalContextFlags.h
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</a>
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<li class="file-stats">
<a href="#104e6fdda183204a0f6c7f66533c1286a18d9fa4">
<span class="deleted-file">
−
include/pbbam/Orientation.h
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</a>
</li>
<li class="file-stats">
<a href="#41cc8535cfb898a3bdd89449b8c1d14370328762">
include/pbbam/PbiFilterTypes.h
</a>
</li>
<li class="file-stats">
<a href="#92e31567179a6d8beb588e5c77cc559e48b56b4f">
<span class="deleted-file">
−
include/pbbam/Position.h
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</a>
</li>
<li class="file-stats">
<a href="#1de50a0d9057d8003b3c71ecb8745d551860a6e1">
<span class="deleted-file">
−
include/pbbam/QualityValue.h
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</a>
</li>
<li class="file-stats">
<a href="#af17cb31a5d04af7fc94b10d2247841a4a026625">
<span class="deleted-file">
−
include/pbbam/QualityValues.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#80a51748ac8ee7298b3eaa8881107a810b196c97">
include/pbbam/ReadGroupInfo.h
</a>
</li>
<li class="file-stats">
<a href="#f313d647c7f230aeb3d550e9afb7003997ce94db">
<span class="deleted-file">
−
include/pbbam/SNR.h
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</a>
</li>
<li class="file-stats">
<a href="#5976ee24cffe5fbbf19854545b5478c93eee2eaa">
<span class="deleted-file">
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include/pbbam/Strand.h
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</a>
</li>
<li class="file-stats">
<a href="#bb49dc50a54df4589bf59a4cb603621a9a910b4c">
include/pbbam/Tag.h
</a>
</li>
<li class="file-stats">
<a href="#2733f3459e2fb30cf73258e60796ca2a1613ef3a">
include/pbbam/bed/BedReader.h
</a>
</li>
<li class="file-stats">
<a href="#95c79ed3d1b53d2962eb30ba93a760fe8ede024a">
include/pbbam/internal/PbiFilterTypes.inl
</a>
</li>
<li class="file-stats">
<a href="#26165a5b46f142eec5dcf3acd6916c56ebb8a917">
include/pbbam/vcf/VcfFormat.h
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</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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