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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/pbbam">Debian Med / pbbam</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/0f2ddb12450f80a4adea9c338e205ae8a646324d">0f2ddb12</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-13T14:05:55+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.3.0+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/7248378609b1f9b6e1042ca77b1cacf27117df96">72483786</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-13T14:05:55+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/5bb67adb6077e4a47b3a4f2e08cf06823cc2cd79">5bb67adb</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-13T14:05:59+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.3.0+dfsg'
Update to upstream version '2.3.0+dfsg'
with Debian dir 23974cc3484d338de8b0660deee4e28ddb7ee308</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/04f706d07b30ad721c3c8a692eaf6a5a3f8ae0c4">04f706d0</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-13T14:05:59+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/fdb32de852ccb4867934537365d84cc4dfc4f914">fdb32de8</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-13T14:07:34+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>refreshed patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/edf0d93c15150830fdc3b4adf5c5cecddd913b9e">edf0d93c</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-13T14:21:31+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: use ${devlibs:Depends} on the -dev package
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/170ba279a832edcdc45f89a13060d24d622c19c4">170ba279</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-13T14:25:53+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches/spelling: fix a typo
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/6abfaf8bbf3c6f3143e990b92ac6b223f1f2a57d">6abfaf8b</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-13T17:26:14+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: build-dep on the newer pbcopper (2.2.0)
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/4f08bf75594fc7186e94f9f9bfe38c73a0558c1e">4f08bf75</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-08-13T17:27:49+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
<span class="new-file">
+
debian/patches/spelling
</span>
</a>
</li>
<li class="file-stats">
<a href="#c3e527b399f9d5adeeb200830b7dcac30c018fea">
debian/patches/use_debian_packaged_python3-cram.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#feedf4d0444f717d7227468a9529c2cf9740b6fd">
include/meson.build
</a>
</li>
<li class="file-stats">
<a href="#0b230145bb13dc51db1e0e68ac2723313ee229a9">
<span class="deleted-file">
−
include/pbbam/Accuracy.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#9b8e7465fdabd2180a1985fc676ea4cf29c95d7d">
include/pbbam/BaiIndexedBamReader.h
</a>
</li>
<li class="file-stats">
<a href="#97939080c14fd57f90725f590b1094f8f0ee9f10">
include/pbbam/BamRecord.h
</a>
</li>
<li class="file-stats">
<a href="#6f0af9cd5ecfc522cf50a17f98ffea7c95f16624">
include/pbbam/BamRecordImpl.h
</a>
</li>
<li class="file-stats">
<a href="#b96a662b54ae36b7eea4f8ddbc5f90133ff94dff">
include/pbbam/BamRecordView.h
</a>
</li>
<li class="file-stats">
<a href="#d0cddba547d6512eef96021d550c8018285b3c44">
<span class="deleted-file">
−
include/pbbam/Cigar.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#982c4f6ff634e1c39fba108b42047dcb77486750">
<span class="deleted-file">
−
include/pbbam/CigarOperation.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#180b1c98d5315b40042488cfb6dc31f5165a5ea1">
include/pbbam/CompositeBamReader.h
</a>
</li>
<li class="file-stats">
<a href="#13e6f05c8e887e418c96dbd9ea25d2567e409652">
include/pbbam/DataSet.h
</a>
</li>
<li class="file-stats">
<a href="#a816d13a982952ef5ed2842d74208d1c5225d058">
include/pbbam/FastqSequence.h
</a>
</li>
<li class="file-stats">
<a href="#82bc8f04215d21341f050baa6b6ca0c663133041">
<span class="deleted-file">
−
include/pbbam/Frames.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#d8f23a330be6b7881d87bf9e5a7c74b929c6b975">
<span class="deleted-file">
−
include/pbbam/GenomicInterval.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#30f06765982715974134a49d4e7acad7c82febb2">
include/pbbam/IndexedFastaReader.h
</a>
</li>
<li class="file-stats">
<a href="#b3b1d38b29ff957eaa33e2da5fd45bae5d0319df">
include/pbbam/IndexedFastqReader.h
</a>
</li>
<li class="file-stats">
<a href="#6d084577b32e408e267e9a7433c8fcd63a278d49">
<span class="deleted-file">
−
include/pbbam/Interval.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#54d0ea5117a99f2e717060643061b9a16bbb0825">
<span class="deleted-file">
−
include/pbbam/LocalContextFlags.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#104e6fdda183204a0f6c7f66533c1286a18d9fa4">
<span class="deleted-file">
−
include/pbbam/Orientation.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#41cc8535cfb898a3bdd89449b8c1d14370328762">
include/pbbam/PbiFilterTypes.h
</a>
</li>
<li class="file-stats">
<a href="#92e31567179a6d8beb588e5c77cc559e48b56b4f">
<span class="deleted-file">
−
include/pbbam/Position.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#1de50a0d9057d8003b3c71ecb8745d551860a6e1">
<span class="deleted-file">
−
include/pbbam/QualityValue.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#af17cb31a5d04af7fc94b10d2247841a4a026625">
<span class="deleted-file">
−
include/pbbam/QualityValues.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#80a51748ac8ee7298b3eaa8881107a810b196c97">
include/pbbam/ReadGroupInfo.h
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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