<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "Menlo"), DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/libpll-2">Debian Med / libpll-2</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libpll-2/-/commit/4b241302f988faf1f35780b2e455874c0437830f">4b241302</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2021-10-20T09:26:18+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Fix watchfile to detect new versions on github
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libpll-2/-/commit/17abd7e5bd511d0fd454324e50e540f2a9a2500f">17abd7e5</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-08-18T14:04:48+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Fix watch file
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libpll-2/-/commit/698ef00a90bb12ac5762d62713ec71a4a29ccf24">698ef00a</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-08-18T14:05:18+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libpll-2/-/commit/eadce51952eb9973909c4afb184b119828135738">eadce519</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-08-18T14:05:19+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 0.4.0</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libpll-2/-/commit/f78a157595d206effd7bd5920fe9d7004ac1b320">f78a1575</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-08-18T14:05:31+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/0.4.0'

Update to upstream version '0.4.0'
with Debian dir 1ea2c8dc77f1ae4e3f0f223e7a68ffc0113d2b7c</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libpll-2/-/commit/e90a9da66a4dba8cd1a53f10cb7e1409bb4fafdd">e90a9da6</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-08-18T14:05:32+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libpll-2/-/commit/b7f15ba1c557eb211120abefa69ed7e2dd5d010d">b7f15ba1</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-08-18T14:05:35+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libpll-2/-/commit/1249dd1f868a7846466b554f5ca2bdb5cd1bc874">1249dd1f</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-08-18T14:13:10+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Remove test template, cleanup changelog
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
26 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
<span class="new-file">
+
CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
<span class="deleted-file">

debian/tests/control
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<span class="deleted-file">

debian/tests/run-unit-test
</span>
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#46dc165972cb5066006662055299e54bc971fd5e">
<span class="new-file">
+
docs/images/libpll_utree_figure.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#6257020ef6d73e460542cafaad234a337c94a71d">
<span class="new-file">
+
docs/libpll.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#7b4a976ef3e4357f552866b7c07304a653e5c6ac">
<span class="new-file">
+
docs/pll_operation_t.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#0ad9f4dfae9cf7db40f3db5a30404b02dab106c7">
<span class="new-file">
+
docs/pll_partition_t.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#8564e5d99ce3090a522d327f66e315463bdd68a2">
<span class="new-file">
+
docs/pll_utree_t.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#346ec63b6c015e755df8c59559972d716c3b2d72">
<span class="new-file">
+
docs/pllmod_treeinfo_t.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#c5ca4c3e05c2b3c59944ae708024da0ba015820f">
<span class="new-file">
+
docs/pllmodules.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#b710575a6dbb622856713ef0209606a7476becad">
examples/newick-fasta-rooted/newick-fasta-rooted.c
</a>
</li>
<li class="file-stats">
<a href="#014330c9fc4eaf915aea52f26c442e3024e143f7">
examples/newick-fasta-unrooted/newick-fasta-unrooted.c
</a>
</li>
<li class="file-stats">
<a href="#d243435fa3209572ee928c9b38e471160e3f57b2">
examples/newick-phylip-unrooted/newick-phylip-unrooted.c
</a>
</li>
<li class="file-stats">
<a href="#fae90b6c90f8835fd854d3225c42561d31c3ae4e">
examples/parsimony/npr-pars.c
</a>
</li>
<li class="file-stats">
<a href="#5b1295fa354f1eff6bf5518ba3cc845bf7fe97b0">
examples/partial-traversal/partial.c
</a>
</li>
<li class="file-stats">
<a href="#3205a9c58f25c314b07121287fdc0acd75562d1e">
examples/protein-list/protein-list.c
</a>
</li>
<li class="file-stats">
<a href="#5e11e2d4811d04a9d0241fbc7f1e438ee39aae44">
examples/stepwise/stepwise.c
</a>
</li>
<li class="file-stats">
<a href="#631c8d07f5ea23b9a9f6c57f5389dfcf94bc33b7">
<span class="new-file">
+
src/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#9b29769010656b0ce4d21dfdf23241939db051d4">
src/compress.c
</a>
</li>
<li class="file-stats">
<a href="#fc4fc99c8d7950e5af71652fe141a6cb434e7757">
src/core_derivatives.c
</a>
</li>
<li class="file-stats">
<a href="#63b7cd85881c6ee33f4ac0bff94a2f741cbbdb84">
src/core_derivatives_avx.c
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/libpll-2/-/compare/46fcb7cd08d2035ed23f4995c71b0d5c438a8c8e...1249dd1f868a7846466b554f5ca2bdb5cd1bc874">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>



</p>
</div>
</body>
</html>