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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/htslib">Debian Med / htslib</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/96b44799f285f7b5e53ed58e7c3edcc34aaf08fa">96b44799</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:19:49+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/6016349998bd26a45e255a84df7ba2f3c479746b">60163499</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:19:50+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.18+ds</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/ee013c771d7a07516170a90d775a4665d171655d">ee013c77</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:19:53+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.18+ds'
Update to upstream version '1.18+ds'
with Debian dir bc4dbd5089ab5b13afcbd992f45cdc7ef69640b8</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/bed6ebb62f9575e7eb6cef54c2cd433fb3246400">bed6ebb6</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:23:39+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>testShebang.patch: refresh.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/31292517b88452a5189836b9fa15e29cefff186c">31292517</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:24:00+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fix_float_precision: refresh patch.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/648022fce2a9cb44dde81386ac73601333fec787">648022fc</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:24:26+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>cram_to_bam_export.patch: refresh.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/b7ccd385e28716152966cfa885465fa4551d238d">b7ccd385</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:24:50+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fix_sequence_of_linked_libs.patch: refresh.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/55168bceb51ec846b607aa9e3aceda999f84a463">55168bce</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:25:26+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>trim-file-prefix.patch: refresh.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/0446aeb54432d309c487d980fae98a78b906018a">0446aeb5</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:26:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fix-cram-external-header.patch: remove: applied upstream.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/422e192ad950860aa08e55ad5fdc774f2e634f13">422e192a</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:27:00+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fix-whatis-entry.patch: remove: applied upstream.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/849252a5135929614367f5aaf96018e8d2d5b0e3">849252a5</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:37:01+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/*.symbols*: introduce new symbols.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/6535d43c39ab1d6b56bdfd9d7ddb7590f956ed31">6535d43c</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:41:50+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/copyright: update upstream copyright year.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/d39067b30e325fe028875673f242da072681c56e">d39067b3</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-08-23T18:42:22+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>ready to upload to experimental.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#c335a27a082cc8d17dd36dc0eda3086cb0c9baaa">
INSTALL
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#784f84af063299f7e2f0676f161fe91f67f77ab0">
bgzf.c
</a>
</li>
<li class="file-stats">
<a href="#6a0642ef327a4ce0d9e388d0b0cf0a71638ad61b">
bgzip.1
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#5c8ade8ae11dfe042170aa961699bbd02f2ec97e">
cram/cram_codecs.c
</a>
</li>
<li class="file-stats">
<a href="#840976018c922d6811354c31daaa780aa6f261bf">
cram/cram_decode.c
</a>
</li>
<li class="file-stats">
<a href="#8966c85872f8c44558af7fb66d11572221b10d6f">
cram/cram_encode.c
</a>
</li>
<li class="file-stats">
<a href="#ce757aebbb1a9c04c097f4250c7869907b11860b">
cram/cram_external.c
</a>
</li>
<li class="file-stats">
<a href="#d5c6148ddb19f2cff561dd2a5c095a842e197383">
cram/cram_index.c
</a>
</li>
<li class="file-stats">
<a href="#5f323d0f8e1572d29ce69422114ea3c683c08bd6">
cram/cram_io.c
</a>
</li>
<li class="file-stats">
<a href="#d8e31481c548910cbd3898e90f7c7e7f71f9c809">
cram/cram_io.h
</a>
</li>
<li class="file-stats">
<a href="#c2e58e744743fb847b78a46d902e0ca3cb766961">
cram/cram_structs.h
</a>
</li>
<li class="file-stats">
<a href="#2102e6a96df61caad248ab81de36a3cee14207a7">
cram/open_trace_file.c
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#6acd856226cbcb52e9d738b091e27200d6abb246">
debian/libhts3.symbols
</a>
</li>
<li class="file-stats">
<a href="#08203429b53d7fa2f4760940c31cbde4eb76e64b">
debian/patches/cram_to_bam_export.patch
</a>
</li>
<li class="file-stats">
<a href="#818311832bfc03e08645e60db70954a2582b13ca">
<span class="deleted-file">
−
debian/patches/fix-cram-external-header.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#4b1a53b0e59dd509cf45cf3823534f660e164ac2">
<span class="deleted-file">
−
debian/patches/fix-whatis-entry.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#06fb03301309b154c051857bbc90bb8d4d2f730b">
debian/patches/fix_float_precision
</a>
</li>
<li class="file-stats">
<a href="#e47cb1a5863bf3a417e62dfa9a72f801cd6d3afe">
debian/patches/fix_sequence_of_linked_libs.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#4e2347832944e2503574fcfbcf9446b65002161c">
debian/patches/testShebang.patch
</a>
</li>
<li class="file-stats">
<a href="#44dc4f3e32ab8a228183c9e6e05e434df3239a45">
debian/patches/trim-file-prefix.patch
</a>
</li>
<li class="file-stats">
<a href="#51f41eca8f6413c77444e12fb0d221cbe1313344">
faidx.c
</a>
</li>
<li class="file-stats">
<a href="#08a33c33100064839a45df0cd5a71a643b71aa54">
hfile.c
</a>
</li>
<li class="file-stats">
<a href="#ef0a779afbd8ee7df5d36e5d500f940e2dd01b62">
hfile_libcurl.c
</a>
</li>
<li class="file-stats">
<a href="#7a9c610bb7f05ffd388d1e4472db647f1d385943">
hfile_s3.c
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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