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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Lance Lin pushed to branch master at <a href="https://salsa.debian.org/med-team/stacks">Debian Med / stacks</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/stacks/-/commit/2ceee63e25053ac18ff5fe1c8319f7fa277ed64b">2ceee63e</a></strong>
<div>
<span> by Lance Lin </span> <i> at 2023-08-29T20:52:47+07:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/stacks/-/commit/eaf87a65c105869ea307fe13c0b77c60692e1c80">eaf87a65</a></strong>
<div>
<span> by Lance Lin </span> <i> at 2023-08-29T20:52:57+07:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.65+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/stacks/-/commit/0b2e20b4405579915a26fb7cf5fa6becb6430e5f">0b2e20b4</a></strong>
<div>
<span> by Lance Lin </span> <i> at 2023-08-29T20:52:58+07:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.65+dfsg'
Update to upstream version '2.65+dfsg'
with Debian dir 47d565ff945cfc044136a488a2eae0a6f63d51fd</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/stacks/-/commit/e8e7211ee59d9e0e0fc87544472ccefbeafc178f">e8e7211e</a></strong>
<div>
<span> by Lance Lin </span> <i> at 2023-08-29T20:52:58+07:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/stacks/-/commit/1fe9419567a74c7a39a80ec5e8b508b8b257bfa4">1fe94195</a></strong>
<div>
<span> by Lance Lin </span> <i> at 2023-08-29T20:53:01+07:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/stacks/-/commit/17046650fbdc6166fa35ab8b001dcf5e95264c8c">17046650</a></strong>
<div>
<span> by Lance Lin </span> <i> at 2023-08-29T22:51:11+07:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update copyright
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/stacks/-/commit/4a2ad033b5f9b532ed9a0baedd4c91560d530318">4a2ad033</a></strong>
<div>
<span> by Lance Lin </span> <i> at 2023-08-29T23:00:16+07:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update executables path to be libexec instead of lib
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/stacks/-/commit/3c8f70ea76f0026fec45a59bbec4c9d4ae42fc5e">3c8f70ea</a></strong>
<div>
<span> by Lance Lin </span> <i> at 2023-08-29T23:00:36+07:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Add patch description
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/stacks/-/commit/e44e7db30b22c629c5484df3619d8ab5c7d61cf3">e44e7db3</a></strong>
<div>
<span> by Lance Lin </span> <i> at 2023-08-29T23:01:12+07:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Add patch for spelling errors
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/stacks/-/commit/b0e2f3161b582f5029684fbc2e6d974b01d87e99">b0e2f316</a></strong>
<div>
<span> by Lance Lin </span> <i> at 2023-08-29T23:01:54+07:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update changelog
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#23dca115fb11d8d80d75cc105cbca9aaef0bab81">
debian/patches/RisR.patch
</a>
</li>
<li class="file-stats">
<a href="#223185599944c735e8616a774c5515ec1b4ddd56">
<span class="new-file">
+
debian/patches/fix_spelling_errors.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#67e1331a43670e34f818d99b8fa6b20c51ff4e78">
debian/patches/script-exe-paths
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#f80f154b64490a485c4418bd70f94184f6336dce">
scripts/denovo_map.pl
</a>
</li>
<li class="file-stats">
<a href="#0c4ded025684d2dd954d9125d5b5a1e62f34a876">
scripts/stacks-integrate-alignments
</a>
</li>
<li class="file-stats">
<a href="#0353c9e2b7196695bab181ee0d870d59a71bd70e">
src/PopSum.cc
</a>
</li>
<li class="file-stats">
<a href="#085c9faf5991f957cd23acef90e998eb35f3d050">
src/PopSum.h
</a>
</li>
<li class="file-stats">
<a href="#119d50f2f2d1e3f64b65bbd89f3cafcfb13ca0d4">
src/Seq.h
</a>
</li>
<li class="file-stats">
<a href="#62c08fe9f48f6c6e7975293895fb0e6babe88b30">
src/Vcf.cc
</a>
</li>
<li class="file-stats">
<a href="#93d8be874e46ff0c6d0a70b2a7599cc7f79391e3">
src/Vcf.h
</a>
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<li class="file-stats">
<a href="#1644bd85290d6144938b4b136f22f9635a67964e">
src/clean.h
</a>
</li>
<li class="file-stats">
<a href="#03f856e8b44c3c125706ba7e7a8c138a914e7063">
src/constants.h
</a>
</li>
<li class="file-stats">
<a href="#9b5186210cef02bd7aa4ac577214b1ba3b2fa6a8">
src/cstacks.cc
</a>
</li>
<li class="file-stats">
<a href="#0399f16eb3e41c20e9269cefea36239d253fa82c">
src/cstacks.h
</a>
</li>
<li class="file-stats">
<a href="#82f890d85e8478e8a6e7412a9b0ca39d938b5cb3">
src/export_formats.cc
</a>
</li>
<li class="file-stats">
<a href="#5d057fdf8543f341f83844acdc94851f57407d44">
src/populations.cc
</a>
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<li class="file-stats">
<a href="#e4426463c64a505bc8fcb199c701d8e0003a4ab4">
src/populations.h
</a>
</li>
<li class="file-stats">
<a href="#6b229f74a1c1dafec515b59e2082ef52596e4d1a">
src/process_radtags.cc
</a>
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<li class="file-stats">
<a href="#55886629c6dcee7a5c2a0a0b4f3966e6939cccb4">
src/renz.cc
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</li>
<li class="file-stats">
<a href="#0497e972518566a57d6cf4dda694400c6c80ec16">
src/sql_utilities.cc
</a>
</li>
<li class="file-stats">
<a href="#35a4588be80f42b82e234dab6ad7f51156ff61cb">
src/sql_utilities.h
</a>
</li>
<li class="file-stats">
<a href="#a229ae1cb4c1ccb3f041e58c9ac02711c0114043">
src/sstacks.cc
</a>
</li>
<li class="file-stats">
<a href="#ae449c78048099e630c7ff0f7b606078e022ed68">
src/tsv2bam.cc
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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