<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "Menlo"), DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch upstream at <a href="https://salsa.debian.org/med-team/augur">Debian Med / augur</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/augur/-/commit/b21203e0b70f7f623eb42feef1fa37f59a3cd373">b21203e0</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-09-10T19:31:42+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 23.0.0</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#3ac517dad11a750eb4733a0cf5eb375d247f3116">
<span class="new-file">
+
.flake8
</span>
</a>
</li>
<li class="file-stats">
<a href="#99d2d4406193bf0dc3e7b84a6c9b9109997a4864">
.github/pull_request_template.md
</a>
</li>
<li class="file-stats">
<a href="#a91b1970808e533a5de67f93824231e12770a765">
.github/workflows/ci.yaml
</a>
</li>
<li class="file-stats">
<a href="#81ccd5c4e1f93eb3ab80c73b5532455bf4f82fe9">
.readthedocs.yml
</a>
</li>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#69f17ab31be5979667265a94a4d0ec2749588bd4">
augur/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#a1a05fb3eb681edc11e8c987f65967f416af0ee1">
augur/__version__.py
</a>
</li>
<li class="file-stats">
<a href="#73daf62265fd7608625d8a35b16297aed2a2399e">
augur/ancestral.py
</a>
</li>
<li class="file-stats">
<a href="#bb76796c5cc72d0d793ca79a16fcc39c7558002d">
augur/argparse_.py
</a>
</li>
<li class="file-stats">
<a href="#fec638407816347df368936c41e5929f42fd4fe6">
augur/data/schema-export-v2.json
</a>
</li>
<li class="file-stats">
<a href="#a34bf74715b32df68fd126394c3bf543847de1da">
augur/distance.py
</a>
</li>
<li class="file-stats">
<a href="#30a665ea1e4ac79f38beb7b999ab740582bdd252">
augur/export_v1.py
</a>
</li>
<li class="file-stats">
<a href="#7051dc1354d6bc0d4b68367cda18a5846f82adb6">
augur/export_v2.py
</a>
</li>
<li class="file-stats">
<a href="#457d59fed48d10a87e557ecaa12091afa6423c8c">
augur/filter/include_exclude_rules.py
</a>
</li>
<li class="file-stats">
<a href="#6f472ebe2f0cdadd2929544cafb4b0e1fb8a0290">
augur/frequencies.py
</a>
</li>
<li class="file-stats">
<a href="#a2755cb286db6c4fda7886a509ef645586f42c72">
augur/frequency_estimators.py
</a>
</li>
<li class="file-stats">
<a href="#18618a0ff10132006e3f9aff6201bffa82f3d6a4">
augur/index.py
</a>
</li>
<li class="file-stats">
<a href="#2c0e8e80cc69382c40326b05bc7e76ca7fd787bb">
augur/io/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e692435be09f36b7d90dec26a0ba8545acc51e5c">
augur/mask.py
</a>
</li>
<li class="file-stats">
<a href="#0a84c8a26047aa607ba180f251044ec69f8228ce">
augur/reconstruct_sequences.py
</a>
</li>
<li class="file-stats">
<a href="#104ddc27c2db78b040d33b5412a2de3d66f15177">
augur/refine.py
</a>
</li>
<li class="file-stats">
<a href="#3c675cc28035c732c5b78691bc1f46880143127f">
augur/sequence_traits.py
</a>
</li>
<li class="file-stats">
<a href="#8fe68be9db3907a4225b9cec4479db0ce65665e8">
augur/titer_model.py
</a>
</li>
<li class="file-stats">
<a href="#5d19d461d231a37a2d86e5a46a59608e1b69a0a1">
augur/titers.py
</a>
</li>
<li class="file-stats">
<a href="#44b2d941b13286b286211f8840bf47c29fde3e65">
augur/traits.py
</a>
</li>
<li class="file-stats">
<a href="#d97e7eeaa6ddd2915e017aa51106e760b0ff3ebf">
augur/translate.py
</a>
</li>
<li class="file-stats">
<a href="#5aa84eddf9e5286c15160859a367e2b67129d7d8">
augur/tree.py
</a>
</li>
<li class="file-stats">
<a href="#0d0305472fcbc5cf656b5d71a25dfd30c8c8d131">
augur/utils.py
</a>
</li>
<li class="file-stats">
<a href="#1b6863ec5e167676f738dbfa3b4fc0930272f65c">
augur/validate.py
</a>
</li>
<li class="file-stats">
<a href="#73cc809ba2916206462a7eb6005867f214a34fcc">
docs/contribute/DEV_DOCS.md
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/augur/-/commit/b21203e0b70f7f623eb42feef1fa37f59a3cd373">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/augur/-/commit/b21203e0b70f7f623eb42feef1fa37f59a3cd373"}}</script>


</p>
</div>
</body>
</html>