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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/transdecoder">Debian Med / transdecoder</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/50a5383dfa623f40e7f918ec23c1e0724b6b2161">50a5383d</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T14:24:17+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>update my email address
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/12f1915e54714f82cbc47ef0a06eb77454e90f07">12f1915e</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T14:24:27+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/watch: update to new tag format.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/6c741412cfae75a040c93bd3ae76a59f7287d341">6c741412</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T14:30:59+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/d1b1fd5ab0b39846c2be73942dc229e3164da24e">d1b1fd5a</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T14:31:01+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 5.7.1</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/4d62313ed50b74c04be91aec8993aaecb295c779">4d62313e</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T14:31:13+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/5.7.1'
Update to upstream version '5.7.1'
with Debian dir f0c1589010a1b0766ffde8a4776c7ecdb2755994</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/03ef1a827e29f583c954b72cc36c50d3da02735f">03ef1a82</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T14:31:13+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/16fd85ba96771ba94c6ad07244b711a9026535a1">16fd85ba</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T14:31:27+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Set upstream metadata fields: Bug-Database, Bug-Submit.
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/f2845ab549a7008b6b59f1f3080dd470a74409f2">f2845ab5</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T14:45:02+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: drop fix-whatis and reproducible-sample_data.patch.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/a453f03f1bbaf5a75ee5c0f52e988d0b7cc3f474">a453f03f</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T14:45:40+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches/no_sudo: don't use sudo during clean operation
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/4d07987fe68733d42c902878347f2527137bbbb8">4d07987f</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T14:46:57+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches/2to2: forward upstream
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/75a042afbb1c934ae49854d1b502d86a94699228">75a042af</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T21:00:25+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control, d/tests/control: add ncbi-blast+ for makeblastdb
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/745e1fc3e3ad716696aca1cad989a92322f122d8">745e1fc3</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T21:02:46+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fix test paths
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/065de4cae03b9a8d0a39c0e6db980b6cdd4d83c7">065de4ca</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T21:51:25+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/transdecoder-docs.docs: new readme name.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/bd270be2c22457f55794df7edb5f86eb62b233d4">bd270be2</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T22:01:39+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>upstream no longer used POD, so drop the pod2man usage.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/transdecoder/-/commit/46a2b52f0d08af7e5c37c1bbbba38662a3ebb47a">46a2b52f</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-09-13T22:54:52+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
9 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#36238d5fa26683466193f61b8d724919bec12681">
Changelog.txt
</a>
</li>
<li class="file-stats">
<a href="#56cd058343dc500d70fb6c2c4aac98dc5da7cbe5">
<span class="new-file">
+
Docker/Dockerfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#bbb101bc2f90c8750e858f6e53300be082686b61">
<span class="new-file">
+
Docker/VERSION.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#6b13ee9878499a8ea5d4e2484a56590d1f1e1da8">
<span class="new-file">
+
Docker/build_docker.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#adac835863f7418a1ebc830e14b7c5802897a7c7">
<span class="new-file">
+
Docker/make_simg.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#34a66579c16d34b2e61d59a78971b8a66bb6c176">
<span class="new-file">
+
Docker/push_docker.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#930dc2aeede52e0c06965d96e3aa59f634a97bf8">
PerlLib/Fasta_retriever.pm
</a>
</li>
<li class="file-stats">
<a href="#f32b57e13548b81b8dd814b0f27e7acf2208917e">
PerlLib/GFF3_utils.pm
→
PerlLib/GFF3_utils2.pm
</a>
</li>
<li class="file-stats">
<a href="#4c5baf9a37211afeaa42c45a8576ab956f496542">
<span class="new-file">
+
PerlLib/GTF.pm
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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<p style="font-size: small; color: #737278;">
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