<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "Menlo"), DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, -apple-system),BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch upstream at <a href="https://salsa.debian.org/med-team/augur">Debian Med / augur</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/augur/-/commit/cfab603bd232995366835f56e577e759628c3149">cfab603b</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-09-27T21:36:02+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 0.875rem; color: #333238; position: relative; font-family: var(--default-mono-font, "Menlo"),"DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 23.1.0</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
24 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#a91b1970808e533a5de67f93824231e12770a765">
.github/workflows/ci.yaml
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#a773b612c960867a9edc1c6573b684235f8c7d2b">
<span class="new-file">
+
LICENSE.nextstrain-cli
</span>
</a>
</li>
<li class="file-stats">
<a href="#a1a05fb3eb681edc11e8c987f65967f416af0ee1">
augur/__version__.py
</a>
</li>
<li class="file-stats">
<a href="#73daf62265fd7608625d8a35b16297aed2a2399e">
augur/ancestral.py
</a>
</li>
<li class="file-stats">
<a href="#ecf80acc5bf0949be03b454821b445e0ea112169">
<span class="new-file">
+
augur/data/__init__.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#3ed70fb067595a65b1e4bf8038592dae0fd7e371">
augur/data/schema-auspice-config-v2.json
</a>
</li>
<li class="file-stats">
<a href="#fec638407816347df368936c41e5929f42fd4fe6">
augur/data/schema-export-v2.json
</a>
</li>
<li class="file-stats">
<a href="#7051dc1354d6bc0d4b68367cda18a5846f82adb6">
augur/export_v2.py
</a>
</li>
<li class="file-stats">
<a href="#d4853c92843493b81bae0b6f7b8a88009c0994df">
augur/util_support/color_parser.py
</a>
</li>
<li class="file-stats">
<a href="#0d0305472fcbc5cf656b5d71a25dfd30c8c8d131">
augur/utils.py
</a>
</li>
<li class="file-stats">
<a href="#1b6863ec5e167676f738dbfa3b4fc0930272f65c">
augur/validate.py
</a>
</li>
<li class="file-stats">
<a href="#269ca7726cb75603327b63afb587eb136c9d78cc">
devel/release
</a>
</li>
<li class="file-stats">
<a href="#2001bad2a6274a7936c111e6f05a1fa33ebc08f7">
devel/test
</a>
</li>
<li class="file-stats">
<a href="#73cc809ba2916206462a7eb6005867f214a34fcc">
docs/contribute/DEV_DOCS.md
</a>
</li>
<li class="file-stats">
<a href="#a03fcc5a0dc90052c58ddd23843d629f3b52b708">
scripts/diff_jsons.py
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
<li class="file-stats">
<a href="#0d01d2dfeca575d013b9b56ea85d349541866771">
<span class="deleted-file">

tests/builds/add_to_alignment/Snakefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#85422aa7d494f065ab25d88d67ba22b5c3d770c2">
<span class="deleted-file">

tests/builds/add_to_alignment/data/aligned.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#851414e00babd141d6517529120fc582372bef70">
<span class="deleted-file">

tests/builds/add_to_alignment/data/metadata.tsv
</span>
</a>
</li>
<li class="file-stats">
<a href="#7d174b156000d73eeb3c22742866ee683c00120f">
<span class="deleted-file">

tests/builds/add_to_alignment/data/new1.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#ce961a4d71a2a1af92efbdea2428742b84020c03">
<span class="deleted-file">

tests/builds/add_to_alignment/data/new2.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#98159dd175bdb90ee39a0f400067d762ba1d0e19">
<span class="deleted-file">

tests/builds/add_to_alignment/data/new3_present_in_alignment.fasta
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/augur/-/commit/cfab603bd232995366835f56e577e759628c3149">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/augur/-/commit/cfab603bd232995366835f56e577e759628c3149"}}</script>


</p>
</div>
</body>
</html>