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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/gmap">Debian Med / gmap</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/gmap/-/commit/0237a0c6df4071ca574f6e8b766bd12aba4a29d0">0237a0c6</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-05T15:25:06+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/gmap/-/commit/31fefcddae2c3a07bfef608be27bc9f764ee8dde">31fefcdd</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-05T15:25:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2023-10-01+ds</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/gmap/-/commit/84e83f9a4b285ee8098d9a21b42194e53785c08c">84e83f9a</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-05T15:25:13+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2023-10-01+ds'
Update to upstream version '2023-10-01+ds'
with Debian dir 2cce7ab20209b5ae57e8a4bb36ce60deedb59485</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/gmap/-/commit/c2ebe66ecf6813bfef201dfe9163f91ca70a66c1">c2ebe66e</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-05T15:58:41+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshed patches.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/gmap/-/commit/9a3b9542833e7090674b3a7aa1671413419c5263">9a3b9542</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-05T17:57:46+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>ignore HAVE_TZCNT & HAVE_LZCNT
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/gmap/-/commit/e6bc235d50cd0f7f4553dc532126242ca6d446fb">e6bc235d</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-05T17:57:46+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
23 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#9fd77014d4c25b9aab7109c2e97ddfe7a415d292">
debian/patches/remove_getopt_code_copy.patch
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</li>
<li class="file-stats">
<a href="#845b25f6a3d0c0cb1dcfe9af2d92fac3ff6b1050">
debian/patches/simd_fixes
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</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#9b29769010656b0ce4d21dfdf23241939db051d4">
src/compress.c
</a>
</li>
<li class="file-stats">
<a href="#c52e3c41defedd3b757b433adc35c1fc77f04540">
src/compress.h
</a>
</li>
<li class="file-stats">
<a href="#43da1f85cfb3d0e20c26e193392588a0aa654c0a">
src/concordance.c
</a>
</li>
<li class="file-stats">
<a href="#28eee06d961fa0695cda20c1b8ee46196f259ff0">
src/concordance.h
</a>
</li>
<li class="file-stats">
<a href="#405ca9175e0ed8d68aa2c3cef7af73fb8af31b5a">
src/exon.c
</a>
</li>
<li class="file-stats">
<a href="#b5f590f1abf7ebb3af70d5c7a09638c046710c9d">
src/extension-search.c
</a>
</li>
<li class="file-stats">
<a href="#72d527140f4bbafea5b13cde7c73befc48b92e63">
src/extension-search.h
</a>
</li>
<li class="file-stats">
<a href="#7a893ba25a0b18be3aa4e3295ec13e042427d28b">
src/genomebits.c
</a>
</li>
<li class="file-stats">
<a href="#abb17fce74ad17b700a3ff057542ad0069be1296">
src/genomebits_consec.c
</a>
</li>
<li class="file-stats">
<a href="#526b2679ae6af7b9ad1ad61cc7192ed05c6d79de">
src/genomebits_count.c
</a>
</li>
<li class="file-stats">
<a href="#d1a71d80a50c38c9cb493f24be3edf3b17c8f562">
src/gsnap.c
</a>
</li>
<li class="file-stats">
<a href="#2b92075ef190eb89fe56503551bb3b955cd9ad68">
src/hitlistpool.c
</a>
</li>
<li class="file-stats">
<a href="#5480605cd6b3407afd953acfaa327543ba45455d">
src/hitlistpool.h
</a>
</li>
<li class="file-stats">
<a href="#990f20eac678a097cbaeb62045b28774977979ac">
src/indel.c
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</li>
<li class="file-stats">
<a href="#ac493283b61ab0f008dd2aafc8b3f8f01d4e900a">
src/indel.h
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</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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<p style="font-size: small; color: #737278;">
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<a href="https://salsa.debian.org/med-team/gmap/-/compare/364ee9af19d965b98def9d7e3b8edc79552bbcbc...e6bc235d50cd0f7f4553dc532126242ca6d446fb">View it on GitLab</a>.
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