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Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/fc1b1c6df3b8d5647908464574bf3c3fea24cdcb">fc1b1c6d</a></strong>
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<span> by Pierre Gruet </span> <i> at 2023-10-08T13:54:58+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.16.2+dfsg</pre>
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<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/4c283d4b5555072f166c00a6adff70fa5c5b8175">4c283d4b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-10-08T13:56:17+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.16.2+dfsg'
Update to upstream version '2.16.2+dfsg'
with Debian dir b9a2543cd3a3e3fc283cc264b0dc50d4474619c0</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/be500b3f7fd14b34610fe58c3eb0eddf1e19ebaa">be500b3f</a></strong>
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<span> by Pierre Gruet </span> <i> at 2023-10-08T13:57:27+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
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<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/244c4b242270dd75c32174a6718a8100962a5e9b">244c4b24</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-10-08T13:58:00+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upload to unstable
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
4 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#7bb2e412ad0c95ac96d16788b123c1bbe5c362db">
src/main/java/org/broad/igv/sam/SAMAlignment.java
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<li class="file-stats">
<a href="#fa926c865c0f12c3d19c4f2a41ea2cc9f0fb471a">
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+
test/sessions/10x_sc_session.xml
</span>
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<li class="file-stats">
<a href="#a541880733ff0efc085d61a53562b5188ec2d2c0">
test/sessions/circview/schatz_paired-end.xml
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Changes:
</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/igv/-/compare/683fc5ec2539c3c7d6453d5bdf7a5fe1773ea557...244c4b242270dd75c32174a6718a8100962a5e9b#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong style="font-weight: bold;">debian/changelog</strong></a>
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1
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<td class="new_line diff-line-num old" data-linenumber="1" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC1" class="line" lang="plaintext">igv (2.16.<span class="idiff left deletion" style="background-color: #fac5cd;">1</span>+dfsg-<span class="idiff deletion" style="background-color: #fac5cd;">2</span>) <span class="idiff right deletion" style="background-color: #fac5cd;">UNRELEASED</span>; urgency=medium</span>
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<td class="new_line diff-line-num new" data-linenumber="1" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
1
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC1" class="line" lang="plaintext">igv (2.16.<span class="idiff left addition" style="background-color: #c7f0d2;">2</span>+dfsg-<span class="idiff addition" style="background-color: #c7f0d2;">1</span>) <span class="idiff right addition" style="background-color: #c7f0d2;">unstable</span>; urgency=medium</span>
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2
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<td class="new_line diff-line-num" data-linenumber="2" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
2
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="old_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
3
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC3" class="line" lang="plaintext"> * New upstream version 2.16.2+dfsg</span>
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<td class="old_line diff-line-num" data-linenumber="3" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
3
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<td class="new_line diff-line-num" data-linenumber="4" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
4
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC4" class="line" lang="plaintext"> * Fixing the clean target (Closes: #1048443)</span>
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4
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<td class="new_line diff-line-num" data-linenumber="5" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
5
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC5" class="line" lang="plaintext"></span>
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<td class="old_line diff-line-num old" data-linenumber="5" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
5
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<td class="new_line diff-line-num old" data-linenumber="6" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC5" class="line" lang="plaintext"> -- Pierre Gruet <pgt@debian.org> <span class="idiff left deletion" style="background-color: #fac5cd;">Mo</span>n, <span class="idiff deletion" style="background-color: #fac5cd;">14 Aug</span> 2023 1<span class="idiff right deletion" style="background-color: #fac5cd;">7:35:47</span> +0200</span>
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<td class="old_line diff-line-num new" data-linenumber="6" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="6" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
6
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC6" class="line" lang="plaintext"> -- Pierre Gruet <pgt@debian.org> <span class="idiff left addition" style="background-color: #c7f0d2;">Su</span>n, <span class="idiff addition" style="background-color: #c7f0d2;">08 Oct</span> 2023 1<span class="idiff right addition" style="background-color: #c7f0d2;">3:57:54</span> +0200</span>
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<td class="new_line diff-line-num" data-linenumber="7" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC7" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC8" class="line" lang="plaintext">igv (2.16.1+dfsg-1) unstable; urgency=medium</span>
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC9" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/igv/-/compare/683fc5ec2539c3c7d6453d5bdf7a5fe1773ea557...244c4b242270dd75c32174a6718a8100962a5e9b#7bb2e412ad0c95ac96d16788b123c1bbe5c362db"><strong style="font-weight: bold;">src/main/java/org/broad/igv/sam/SAMAlignment.java</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="330" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="330" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
<td class="line_content match" style="color: rgba(31,30,36,0.24); padding: inherit;" bgcolor="#fbfafd">@@ -330,12 +330,17 @@ public class SAMAlignment implements Alignment {</td>
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<td class="old_line diff-line-num" data-linenumber="331" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
331
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<td class="new_line diff-line-num" data-linenumber="331" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
331
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC331" class="line" lang="java"> <span class="nc" style="color: #458; font-weight: 600;">Object</span> <span class="n" style="color: #333;">mm</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">hasAttribute</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Mm"</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">?</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAttribute</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Mm"</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAttribute</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"MM"</span><span class="o" style="font-weight: 600;">);</span></span>
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<td class="old_line diff-line-num" data-linenumber="332" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
332
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<td class="new_line diff-line-num" data-linenumber="332" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
332
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC332" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="o" style="font-weight: 600;">[]</span> <span class="n" style="color: #333;">ml</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">(</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="o" style="font-weight: 600;">[])</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">hasAttribute</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Ml"</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">?</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAttribute</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Ml"</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getAttribute</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"ML"</span><span class="o" style="font-weight: 600;">));</span></span>
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<td class="old_line diff-line-num old" data-linenumber="333" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
333
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<td class="new_line diff-line-num old" data-linenumber="333" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC333" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="o" style="font-weight: 600;">[]</span> <span class="n" style="color: #333;">sequence</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getReadBases</span><span class="o" style="font-weight: 600;">();</span></span>
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<td class="old_line diff-line-num" data-linenumber="334" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
334
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<td class="new_line diff-line-num" data-linenumber="333" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
333
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC333" class="line" lang="java"></span>
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<td class="old_line diff-line-num old" data-linenumber="335" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
335
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<td class="new_line diff-line-num old" data-linenumber="334" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC335" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mm</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">toString</span><span class="o" style="font-weight: 600;">().</span><span class="na" style="color: #008080;">length</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span> <span class="c1" style="color: #998; font-style: italic;">// TODO -- more extensive validation?</span></span>
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<td class="old_line diff-line-num old" data-linenumber="336" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
336
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<td class="new_line diff-line-num old" data-linenumber="334" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC336" class="line" lang="java"> <span class="n" style="color: #333;">baseModificationSets</span> <span class="o" style="font-weight: 600;">=</span> <span class="nc" style="color: #458; font-weight: 600;">Collections</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">EMPTY_LIST</span><span class="o" style="font-weight: 600;">;</span></span>
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<td class="old_line diff-line-num old" data-linenumber="337" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
337
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<td class="new_line diff-line-num old" data-linenumber="334" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC337" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="o" style="font-weight: 600;">{</span></span>
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<td class="old_line diff-line-num old" data-linenumber="338" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
338
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<td class="new_line diff-line-num old" data-linenumber="334" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC338" class="line" lang="java"> <span class="n" style="color: #333;">baseModificationSets</span> <span class="o" style="font-weight: 600;">=</span> <span class="nc" style="color: #458; font-weight: 600;">BaseModificationUtils</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getBaseModificationSets</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mm</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">toString</span><span class="o" style="font-weight: 600;">(),</span> <span class="n" style="color: #333;">ml</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">isNegativeStrand</span><span class="o" style="font-weight: 600;">());</span></span>
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<td class="old_line diff-line-num new" data-linenumber="339" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="334" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
334
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC334" class="line" lang="java"> <span class="c1" style="color: #998; font-style: italic;">// Minimal tag validation</span></span>
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<td class="old_line diff-line-num new" data-linenumber="339" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="335" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
335
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC335" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mm</span> <span class="k" style="font-weight: 600;">instanceof</span> <span class="nc" style="color: #458; font-weight: 600;">String</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">ml</span> <span class="o" style="font-weight: 600;">==</span> <span class="kc" style="font-weight: 600;">null</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">ml</span> <span class="k" style="font-weight: 600;">instanceof</span> <span class="kt" style="color: #458; font-weight: 600;">byte</span> <span class="o" style="font-weight: 600;">[]))</span> <span class="o" style="font-weight: 600;">{</span></span>
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<td class="new_line diff-line-num new" data-linenumber="336" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
336
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC336" class="line" lang="java"></span>
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<td class="old_line diff-line-num new" data-linenumber="339" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="337" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
337
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC337" class="line" lang="java"> <span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="o" style="font-weight: 600;">[]</span> <span class="n" style="color: #333;">sequence</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getReadBases</span><span class="o" style="font-weight: 600;">();</span></span>
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<td class="new_line diff-line-num new" data-linenumber="338" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
338
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC338" class="line" lang="java"></span>
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<td class="old_line diff-line-num new" data-linenumber="339" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="339" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
339
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC339" class="line" lang="java"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mm</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">toString</span><span class="o" style="font-weight: 600;">().</span><span class="na" style="color: #008080;">length</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span> <span class="c1" style="color: #998; font-style: italic;">// TODO -- more extensive validation?</span></span>
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<td class="new_line diff-line-num new" data-linenumber="340" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
340
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC340" class="line" lang="java"> <span class="n" style="color: #333;">baseModificationSets</span> <span class="o" style="font-weight: 600;">=</span> <span class="nc" style="color: #458; font-weight: 600;">Collections</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">EMPTY_LIST</span><span class="o" style="font-weight: 600;">;</span></span>
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<td class="new_line diff-line-num new" data-linenumber="341" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
341
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC341" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="o" style="font-weight: 600;">{</span></span>
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<td class="old_line diff-line-num new" data-linenumber="339" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="342" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
342
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC342" class="line" lang="java"> <span class="n" style="color: #333;">baseModificationSets</span> <span class="o" style="font-weight: 600;">=</span> <span class="nc" style="color: #458; font-weight: 600;">BaseModificationUtils</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: #008080;">getBaseModificationSets</span><span class="o" style="font-weight: 600;">((</span><span class="nc" style="color: #458; font-weight: 600;">String</span><span class="o" style="font-weight: 600;">)</span> <span class="n" style="color: #333;">mm</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">ml</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">isNegativeStrand</span><span class="o" style="font-weight: 600;">());</span></span>
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<td class="new_line diff-line-num new" data-linenumber="343" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
343
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC343" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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339
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<td class="new_line diff-line-num" data-linenumber="344" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
344
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC344" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<td class="old_line diff-line-num" data-linenumber="340" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
340
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<td class="new_line diff-line-num" data-linenumber="345" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
345
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC345" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<td class="old_line diff-line-num" data-linenumber="341" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
341
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<td class="new_line diff-line-num" data-linenumber="346" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
346
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC346" class="line" lang="java"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">baseModificationSets</span><span class="o" style="font-weight: 600;">;</span></span>
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<a href="https://salsa.debian.org/med-team/igv/-/compare/683fc5ec2539c3c7d6453d5bdf7a5fe1773ea557...244c4b242270dd75c32174a6718a8100962a5e9b#fa926c865c0f12c3d19c4f2a41ea2cc9f0fb471a"><strong style="font-weight: bold;">test/sessions/10x_sc_session.xml</strong></a>
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<td class="new_line diff-line-num new" data-linenumber="1" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
1
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC1" class="line" lang="xml"><span class="cp" style="color: #999; font-weight: 600;"><?xml version="1.0" encoding="UTF-8" standalone="no"?></span></span>
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<td class="new_line diff-line-num new" data-linenumber="2" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
2
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC2" class="line" lang="xml"><span class="nt" style="color: #000080;"><Session</span> <span class="na" style="color: #008080;">genome=</span><span class="s" style="color: #d14;">"hg38_1kg"</span> <span class="na" style="color: #008080;">locus=</span><span class="s" style="color: #d14;">"chr3:38368124-38457202"</span> <span class="na" style="color: #008080;">version=</span><span class="s" style="color: #d14;">"8"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
3
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC3" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Resources></span></span>
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<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
4
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Resource</span> <span class="na" style="color: #008080;">index=</span><span class="s" style="color: #d14;">"https://cf.10xgenomics.com/samples/cell-exp/7.0.1/SC3pv3_GEX_Human_PBMC/SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam.bai"</span> <span class="na" style="color: #008080;">path=</span><span class="s" style="color: #d14;">"https://cf.10xgenomics.com/samples/cell-exp/7.0.1/SC3pv3_GEX_Human_PBMC/SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam"</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"bam"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
5
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Resources></span></span>
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<td class="new_line diff-line-num new" data-linenumber="6" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
6
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC6" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Panel</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"3212"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Panel1689308075397"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"1422"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="new_line diff-line-num new" data-linenumber="7" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
7
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam Coverage"</span> <span class="na" style="color: #008080;">autoScale=</span><span class="s" style="color: #d14;">"true"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.sam.CoverageTrack"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"12"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://cf.10xgenomics.com/samples/cell-exp/7.0.1/SC3pv3_GEX_Human_PBMC/SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam_coverage"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam Coverage"</span> <span class="na" style="color: #008080;">snpThreshold=</span><span class="s" style="color: #d14;">"0.2"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="new_line diff-line-num new" data-linenumber="8" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
8
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><DataRange</span> <span class="na" style="color: #008080;">baseline=</span><span class="s" style="color: #d14;">"0.0"</span> <span class="na" style="color: #008080;">drawBaseline=</span><span class="s" style="color: #d14;">"true"</span> <span class="na" style="color: #008080;">flipAxis=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">maximum=</span><span class="s" style="color: #d14;">"17.0"</span> <span class="na" style="color: #008080;">minimum=</span><span class="s" style="color: #d14;">"0.0"</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"LINEAR"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
9
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Track></span></span>
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<td class="new_line diff-line-num new" data-linenumber="10" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
10
</td>
<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam Junctions"</span> <span class="na" style="color: #008080;">autoScale=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.sam.SpliceJunctionTrack"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"12"</span> <span class="na" style="color: #008080;">groupByStrand=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"60"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://cf.10xgenomics.com/samples/cell-exp/7.0.1/SC3pv3_GEX_Human_PBMC/SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam_junctions"</span> <span class="na" style="color: #008080;">maxdepth=</span><span class="s" style="color: #d14;">"50"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam Junctions"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="new_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
11
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.sam.AlignmentTrack"</span> <span class="na" style="color: #008080;">color=</span><span class="s" style="color: #d14;">"185,185,185"</span> <span class="na" style="color: #008080;">displayMode=</span><span class="s" style="color: #d14;">"EXPANDED"</span> <span class="na" style="color: #008080;">experimentType=</span><span class="s" style="color: #d14;">"RNA"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"12"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://cf.10xgenomics.com/samples/cell-exp/7.0.1/SC3pv3_GEX_Human_PBMC/SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"SC3pv3_GEX_Human_PBMC_possorted_genome_bam.bam"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="new_line diff-line-num new" data-linenumber="12" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
12
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC12" class="line" lang="xml"> <span class="nt" style="color: #000080;"><RenderOptions/></span></span>
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<td class="new_line diff-line-num new" data-linenumber="13" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
13
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Track></span></span>
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<td class="new_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
14
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Panel></span></span>
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<td class="new_line diff-line-num new" data-linenumber="15" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
15
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Panel</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"165"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"FeaturePanel"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"1422"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
16
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"Reference sequence"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.track.SequenceTrack"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"12"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"Reference sequence"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Reference sequence"</span> <span class="na" style="color: #008080;">sequenceTranslationStrandValue=</span><span class="s" style="color: #d14;">"POSITIVE"</span> <span class="na" style="color: #008080;">shouldShowTranslation=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="new_line diff-line-num new" data-linenumber="17" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
17
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"Refseq Genes"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.track.FeatureTrack"</span> <span class="na" style="color: #008080;">colorScale=</span><span class="s" style="color: #d14;">"ContinuousColorScale;0.0;836.0;255,255,255;0,0,178"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"12"</span> <span class="na" style="color: #008080;">groupByStrand=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/ncbiRefSeq.txt.gz"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Refseq Genes"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="new_line diff-line-num new" data-linenumber="18" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
18
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Panel></span></span>
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<td class="new_line diff-line-num new" data-linenumber="19" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
19
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC19" class="line" lang="xml"> <span class="nt" style="color: #000080;"><PanelLayout</span> <span class="na" style="color: #008080;">dividerFractions=</span><span class="s" style="color: #d14;">"0.010550996483001172,0.8007033997655334"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="new_line diff-line-num new" data-linenumber="20" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
20
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><HiddenAttributes></span></span>
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<td class="new_line diff-line-num new" data-linenumber="21" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
21
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Attribute</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"DATA FILE"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="new_line diff-line-num new" data-linenumber="22" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
22
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Attribute</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"DATA TYPE"</span><span class="nt" style="color: #000080;">/></span></span>
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23
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24
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC24" class="line" lang="xml"> <span class="nt" style="color: #000080;"></HiddenAttributes></span></span>
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<td class="new_line diff-line-num new" data-linenumber="25" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
25
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC25" class="line" lang="xml"><span class="nt" style="color: #000080;"></Session></span></span></pre></td>
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<a href="https://salsa.debian.org/med-team/igv/-/compare/683fc5ec2539c3c7d6453d5bdf7a5fe1773ea557...244c4b242270dd75c32174a6718a8100962a5e9b#a541880733ff0efc085d61a53562b5188ec2d2c0"><strong style="font-weight: bold;">test/sessions/circview/schatz_paired-end.xml</strong></a>
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1
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1
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC1" class="line" lang="xml"><span class="cp" style="color: #999; font-weight: 600;"><?xml version="1.0" encoding="UTF-8" standalone="no"?></span></span>
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2
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<td class="new_line diff-line-num old" data-linenumber="2" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC2" class="line" lang="xml"><span class="nt" style="color: #000080;"><Session</span> <span class="na" style="color: #008080;">genome=</span><span class="s" style="color: #d14;">"hg19"</span> <span class="na" style="color: #008080;">locus=</span><span class="s" style="color: #d14;">"<span class="idiff left right deletion" style="background-color: #fac5cd;">chr17:37276854-37277154</span>"</span> <span class="na" style="color: #008080;">version=</span><span class="s" style="color: #d14;">"8"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="new_line diff-line-num new" data-linenumber="2" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
2
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC2" class="line" lang="xml"><span class="nt" style="color: #000080;"><Session</span> <span class="na" style="color: #008080;">genome=</span><span class="s" style="color: #d14;">"hg19"</span> <span class="na" style="color: #008080;">locus=</span><span class="s" style="color: #d14;">"<span class="idiff left right addition" style="background-color: #c7f0d2;">All</span>"</span> <span class="na" style="color: #008080;">version=</span><span class="s" style="color: #d14;">"8"</span><span class="nt" style="color: #000080;">></span></span>
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3
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<td class="new_line diff-line-num" data-linenumber="3" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
3
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC3" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Resources></span></span>
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4
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC4" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Resource</span> <span class="na" style="color: #008080;">path=</span><span class="s" style="color: #d14;">"https://s3.amazonaws.com/igv.org.demo/SKBR3/SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam.delly_noalt_filtered.vcf.gz"</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"vcf"</span><span class="nt" style="color: #000080;">/></span></span>
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5
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Resource</span> <span class="na" style="color: #008080;">path=</span><span class="s" style="color: #d14;">"https://s3.amazonaws.com/igv.org.demo/SKBR3/SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam"</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"bam"</span><span class="nt" style="color: #000080;">/></span></span>
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5
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<td class="new_line diff-line-num old" data-linenumber="6" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC5" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Resource</span> <span class="na" style="color: #008080;">path=</span><span class="s" style="color: #d14;">"https://s3.amazonaws.com/igv.org.demo/SKBR3/reads_lr_skbr3.fa_ngmlr-0.2.3_mapped.bam.sniffles1kb_auto_l8_s5_noalt_filtered.tra.vcf"</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"vcf"</span><span class="nt" style="color: #000080;">/></span></span>
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6
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6
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC6" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Resources></span></span>
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7
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<td class="new_line diff-line-num old" data-linenumber="7" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC7" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Panel</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"137"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"DataPanel"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"1465"</span><span class="nt" style="color: #000080;">></span></span>
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8
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<td class="new_line diff-line-num old" data-linenumber="7" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"reads_lr_skbr3.fa_ngmlr-0.2.3_mapped.bam.sniffles1kb_auto_l8_s5_noalt_filtered.tra.vcf"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.variant.VariantTrack"</span> <span class="na" style="color: #008080;">colorScale=</span><span class="s" style="color: #d14;">"ContinuousColorScale;0.0;10.0;255,255,255;0,0,178"</span> <span class="na" style="color: #008080;">displayMode=</span><span class="s" style="color: #d14;">"EXPANDED"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"10"</span> <span class="na" style="color: #008080;">groupByStrand=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://s3.amazonaws.com/igv.org.demo/SKBR3/reads_lr_skbr3.fa_ngmlr-0.2.3_mapped.bam.sniffles1kb_auto_l8_s5_noalt_filtered.tra.vcf"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"reads_lr_skbr3.fa_ngmlr-0.2.3_mapped.bam.sniffles1kb_auto_l8_s5_noalt_filtered.tra.vcf"</span> <span class="na" style="color: #008080;">siteColorMode=</span><span class="s" style="color: #d14;">"ALLELE_FREQUENCY"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Panel></span></span>
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10
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<td class="new_line diff-line-num old" data-linenumber="7" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Panel</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"134"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Panel1643653158403"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"1465"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="new_line diff-line-num new" data-linenumber="7" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
7
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC7" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Panel</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"64"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Panel1643653158403"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"1133"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="old_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
11
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<td class="new_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
8
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC8" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam.delly_noalt_filtered.vcf.gz"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.variant.VariantTrack"</span> <span class="na" style="color: #008080;">colorScale=</span><span class="s" style="color: #d14;">"ContinuousColorScale;0.0;52.0;255,255,255;0,0,178"</span> <span class="na" style="color: #008080;">displayMode=</span><span class="s" style="color: #d14;">"EXPANDED"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"10"</span> <span class="na" style="color: #008080;">groupByStrand=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://s3.amazonaws.com/igv.org.demo/SKBR3/SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam.delly_noalt_filtered.vcf.gz"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Delly SVs"</span> <span class="na" style="color: #008080;">siteColorMode=</span><span class="s" style="color: #d14;">"ALLELE_FREQUENCY"</span> <span class="na" style="color: #008080;">squishedHeight=</span><span class="s" style="color: #d14;">"1"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="old_line diff-line-num" data-linenumber="12" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
12
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<td class="new_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
9
</td>
<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC9" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Panel></span></span>
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<td class="old_line diff-line-num old" data-linenumber="13" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
13
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<td class="new_line diff-line-num old" data-linenumber="10" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Panel</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"<span class="idiff left deletion" style="background-color: #fac5cd;">2648</span>"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Panel1643653129901"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"1<span class="idiff right deletion" style="background-color: #fac5cd;">465</span>"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="old_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="10" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
10
</td>
<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC10" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Panel</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"<span class="idiff left addition" style="background-color: #c7f0d2;">379</span>"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Panel1643653129901"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"1<span class="idiff right addition" style="background-color: #c7f0d2;">133</span>"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="old_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
14
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<td class="new_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
11
</td>
<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC11" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam Coverage"</span> <span class="na" style="color: #008080;">autoScale=</span><span class="s" style="color: #d14;">"true"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.sam.CoverageTrack"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"10"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://s3.amazonaws.com/igv.org.demo/SKBR3/SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam_coverage"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Illumina Coverage"</span> <span class="na" style="color: #008080;">snpThreshold=</span><span class="s" style="color: #d14;">"0.2"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="old_line diff-line-num old" data-linenumber="15" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
15
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<td class="new_line diff-line-num old" data-linenumber="12" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><DataRange</span> <span class="na" style="color: #008080;">baseline=</span><span class="s" style="color: #d14;">"0.0"</span> <span class="na" style="color: #008080;">drawBaseline=</span><span class="s" style="color: #d14;">"true"</span> <span class="na" style="color: #008080;">flipAxis=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">maximum=</span><span class="s" style="color: #d14;">"1<span class="idiff left right deletion" style="background-color: #fac5cd;">80.0</span>"</span> <span class="na" style="color: #008080;">minimum=</span><span class="s" style="color: #d14;">"0.0"</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"LINEAR"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="old_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="12" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
12
</td>
<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC12" class="line" lang="xml"> <span class="nt" style="color: #000080;"><DataRange</span> <span class="na" style="color: #008080;">baseline=</span><span class="s" style="color: #d14;">"0.0"</span> <span class="na" style="color: #008080;">drawBaseline=</span><span class="s" style="color: #d14;">"true"</span> <span class="na" style="color: #008080;">flipAxis=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">maximum=</span><span class="s" style="color: #d14;">"1<span class="idiff left right addition" style="background-color: #c7f0d2;">7.761848</span>"</span> <span class="na" style="color: #008080;">minimum=</span><span class="s" style="color: #d14;">"0.0"</span> <span class="na" style="color: #008080;">type=</span><span class="s" style="color: #d14;">"LINEAR"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="old_line diff-line-num" data-linenumber="16" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
16
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<td class="new_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
13
</td>
<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC13" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Track></span></span>
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<td class="old_line diff-line-num old" data-linenumber="17" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
17
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<td class="new_line diff-line-num old" data-linenumber="14" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam Junctions"</span> <span class="na" style="color: #008080;"><span class="idiff left deletion" style="background-color: #fac5cd;">autoScale=</span></span><span class="s" style="color: #d14;"><span class="idiff deletion" style="background-color: #fac5cd;">"false"</span></span><span class="idiff deletion" style="background-color: #fac5cd;"> </span><span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.sam.SpliceJunctionTrack"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"10"</span> <span class="na" style="color: #008080;">groupByStrand=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"60"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://s3.amazonaws.com/igv.org.demo/SKBR3/SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam_junctions"</span> <span class="na" style="color: #008080;"><span class="idiff deletion" style="background-color: #fac5cd;">maxdepth=</span></span><span class="s" style="color: #d14;"><span class="idiff deletion" style="background-color: #fac5cd;">"50"</span></span><span class="idiff right deletion" style="background-color: #fac5cd;"> </span><span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Illumina Junctions"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"false"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="old_line diff-line-num new" data-linenumber="18" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
14
</td>
<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC14" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam Junctions"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.sam.SpliceJunctionTrack"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"10"</span> <span class="na" style="color: #008080;">groupByStrand=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"60"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://s3.amazonaws.com/igv.org.demo/SKBR3/SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam_junctions"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Illumina Junctions"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"false"</span><span class="nt" style="color: #000080;">/></span></span>
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18
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<td class="new_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
15
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC15" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.sam.AlignmentTrack"</span> <span class="na" style="color: #008080;">color=</span><span class="s" style="color: #d14;">"185,185,185"</span> <span class="na" style="color: #008080;">displayMode=</span><span class="s" style="color: #d14;">"EXPANDED"</span> <span class="na" style="color: #008080;">experimentType=</span><span class="s" style="color: #d14;">"OTHER"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"10"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://s3.amazonaws.com/igv.org.demo/SKBR3/SKBR3_550bp_pcrFREE_S1_L001_AND_L002_R1_001.101bp.bwamem.ill.mapped.sort.bam"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Illumina Alignments"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">></span></span>
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19
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<td class="new_line diff-line-num" data-linenumber="16" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
16
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC16" class="line" lang="xml"> <span class="nt" style="color: #000080;"><RenderOptions/></span></span>
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<td class="old_line diff-line-num" data-linenumber="20" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
20
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<td class="new_line diff-line-num" data-linenumber="17" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
17
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC17" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Track></span></span>
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<td class="old_line diff-line-num" data-linenumber="21" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
21
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<td class="new_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
18
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC18" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Panel></span></span>
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<td class="old_line diff-line-num old" data-linenumber="22" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
22
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<td class="new_line diff-line-num old" data-linenumber="19" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Panel</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"<span class="idiff left deletion" style="background-color: #fac5cd;">13</span>6"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"FeaturePanel"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"1<span class="idiff right deletion" style="background-color: #fac5cd;">465</span>"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="old_line diff-line-num new" data-linenumber="23" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="19" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
19
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC19" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Panel</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"<span class="idiff left addition" style="background-color: #c7f0d2;">9</span>6"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"FeaturePanel"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"1<span class="idiff right addition" style="background-color: #c7f0d2;">133</span>"</span><span class="nt" style="color: #000080;">></span></span>
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<td class="old_line diff-line-num" data-linenumber="23" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
23
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<td class="new_line diff-line-num" data-linenumber="20" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
20
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC20" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"Reference sequence"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.track.SequenceTrack"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"10"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"Reference sequence"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Reference sequence"</span> <span class="na" style="color: #008080;">sequenceTranslationStrandValue=</span><span class="s" style="color: #d14;">"POSITIVE"</span> <span class="na" style="color: #008080;">shouldShowTranslation=</span><span class="s" style="color: #d14;">"true"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="old_line diff-line-num" data-linenumber="24" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
24
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<td class="new_line diff-line-num" data-linenumber="21" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
21
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC21" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Track</span> <span class="na" style="color: #008080;">attributeKey=</span><span class="s" style="color: #d14;">"Refseq Genes"</span> <span class="na" style="color: #008080;">clazz=</span><span class="s" style="color: #d14;">"org.broad.igv.track.FeatureTrack"</span> <span class="na" style="color: #008080;">fontSize=</span><span class="s" style="color: #d14;">"10"</span> <span class="na" style="color: #008080;">groupByStrand=</span><span class="s" style="color: #d14;">"false"</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"https://s3.amazonaws.com/igv.org.genomes/hg19/ncbiRefSeq.sorted.txt.gz"</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"Refseq Genes"</span> <span class="na" style="color: #008080;">visible=</span><span class="s" style="color: #d14;">"true"</span><span class="nt" style="color: #000080;">/></span></span>
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25
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<td class="new_line diff-line-num" data-linenumber="22" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
22
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC22" class="line" lang="xml"> <span class="nt" style="color: #000080;"></Panel></span></span>
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<td class="old_line diff-line-num old" data-linenumber="26" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
26
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<td class="new_line diff-line-num old" data-linenumber="23" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span id="LC26" class="line" lang="xml"> <span class="nt" style="color: #000080;"><PanelLayout</span> <span class="na" style="color: #008080;">dividerFractions=</span><span class="s" style="color: #d14;">"0.<span class="idiff left right deletion" style="background-color: #fac5cd;">18051948051948052,0.36103896103896105,0.8168831168831169</span>"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="old_line diff-line-num new" data-linenumber="27" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="23" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
23
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span id="LC23" class="line" lang="xml"> <span class="nt" style="color: #000080;"><PanelLayout</span> <span class="na" style="color: #008080;">dividerFractions=</span><span class="s" style="color: #d14;">"0.<span class="idiff left right addition" style="background-color: #c7f0d2;">010714285714285714,0.13392857142857142,0.8196428571428571</span>"</span><span class="nt" style="color: #000080;">/></span></span>
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27
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<td class="new_line diff-line-num" data-linenumber="24" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
24
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC24" class="line" lang="xml"> <span class="nt" style="color: #000080;"><HiddenAttributes></span></span>
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<td class="old_line diff-line-num" data-linenumber="28" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
28
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<td class="new_line diff-line-num" data-linenumber="25" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
25
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC25" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Attribute</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"DATA FILE"</span><span class="nt" style="color: #000080;">/></span></span>
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<td class="old_line diff-line-num" data-linenumber="29" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
29
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<td class="new_line diff-line-num" data-linenumber="26" style="width: 35px; color: rgba(31,30,36,0.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
26
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span id="LC26" class="line" lang="xml"> <span class="nt" style="color: #000080;"><Attribute</span> <span class="na" style="color: #008080;">name=</span><span class="s" style="color: #d14;">"DATA TYPE"</span><span class="nt" style="color: #000080;">/></span></span>
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