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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/mmseqs2">Debian Med / mmseqs2</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mmseqs2/-/commit/bbeae25df8c74b6ff4afcdeed868f2f5bdd0d00a">bbeae25d</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-31T11:08:11+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 15-6f452+ds</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mmseqs2/-/commit/a6c682cfb59c048a8631317678558d68dfd49fee">a6c682cf</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-31T11:08:23+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/15-6f452+ds'
Update to upstream version '15-6f452+ds'
with Debian dir 8a75c84a4c30c6712a81ddbfd5bc2c178ed94157</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mmseqs2/-/commit/9cf49c48c6c322c89f6b62f7c84d86d4912d18fe">9cf49c48</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-31T11:09:56+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream release.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mmseqs2/-/commit/6a075fe281bc232a14f3650f2f54e940c015138c">6a075fe2</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-31T11:09:56+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: remove mmseqs_wrapper.bat hack, fixed upstream.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mmseqs2/-/commit/339aeaf75f4dda3dbd94a332d02087568027190b">339aeaf7</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-31T11:09:56+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: refreshed; dropped gcc-13 patch applied upstream.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mmseqs2/-/commit/de6e60777f0de9d7b086b7c5d8f4ca58fb8128e7">de6e6077</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-31T11:10:27+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/mmseqs2/-/commit/a1a500e58ae909b9ab5243bab28134b3b89a579f">a1a500e5</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-10-31T11:10:34+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#c7fe42138e1c33a6d76bbf9a03822d41e03da2cc">
.cirrus.yml
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.github/workflows/mac-arm64.yml
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<a href="#40ebc6823f24f296c0cd3fddd6ccda69b74ff2e4">
azure-pipelines.yml
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<a href="#9ae988dc7a7741929b28a9854552f334defa34f3">
data/workflow/blastp.sh
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<a href="#d74628ddde2e570a283b47e37c105120dcd0cd47">
data/workflow/blastpgp.sh
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<a href="#d3d522ac4a50917a3fea4e907c92ee38427773cb">
data/workflow/databases.sh
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<a href="#1decdfdb95f4e52cd0e9b3b670a9239008e69b73">
data/workflow/iterativepp.sh
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<a href="#17ef44653834c46bcb807857d1d2d03317a0e401">
data/workflow/rbh.sh
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#ea5ce4651ae3d81341fa545b7cb1340e7b9a5fe4">
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−
debian/patches/fix-gcc-13.patch
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<a href="#5d4bc5bec9cccce49eb00b14a49d6fa0feedbf70">
debian/patches/fix_tests.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#4d2d1dbfde0122105c73301fc1bd4fcb620a3554">
debian/patches/use_system_gzstream.patch
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<a href="#5cf7b119d35a40e38895a022bba313d863d58ff2">
lib/alp/sls_pvalues.hpp
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<a href="#389a362f86d5f722174cc775cb08e643658a6a20">
lib/ksw2/kseq.h
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<a href="#631c8d07f5ea23b9a9f6c57f5389dfcf94bc33b7">
src/CMakeLists.txt
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<a href="#132d8a0da3983ac041380cf2ff51475bb5e16978">
src/CommandDeclarations.h
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<a href="#00f986f1dd52f07735732093a3fb09f8afa37c25">
src/MMseqsBase.cpp
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<a href="#dd1183e8b65be0a53e16fb7fe7b24281e03766e1">
src/alignment/BandedNucleotideAligner.cpp
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<a href="#9dd3d9a3427cd76a133bcd609a85b745469f07ee">
src/alignment/Matcher.cpp
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src/alignment/MultipleAlignment.cpp
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src/alignment/PSSMCalculator.cpp
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src/alignment/PSSMCalculator.h
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src/alignment/StripedSmithWaterman.cpp
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src/alignment/StripedSmithWaterman.h
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<a href="#d261e6918ab334b4c4b308ffca96ff22591f0553">
src/alignment/rescorediagonal.cpp
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src/clustering/Clustering.cpp
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The diff was not included because it is too large.
</h5>
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—
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